Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq12120 95.1 3e-15 >seq12120 Length=1614126 Score = 95.1 bits (104), Expect = 3e-15 Identities = 191/277 (69%), Gaps = 20/277 (7%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| |||| || ||||| ||| ||||||| | || || || || || || | | Sbjct 1445072 TTCCTAATGGGTGCTATGGGAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 1445131 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 1445132 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 1445191 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGA-GGTGATAGGATTGCTCAGTTA 1133 |||||||| || || |||| || | | || | |||||| | | ||| ||| | Sbjct 1445192 TTAATTTTGGCAAAGAAAAGC----TCGAAGTCAAAAAGGGTGATCGAACTGCACAGCTC 1445247 Query 1134 ATTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGAT 1187 ||||||| || || | |||| | ||| |||||| ||| ||| ||||| || Sbjct 1445248 ATTTGTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGAC 1445301 Query 1188 TCGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | ||||||||||| | ||| ||||| || || |||| Sbjct 1445302 ACTGAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 1445338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138631020480228