Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_017981.1
Length=49981
Score E
Sequences producing significant alignments: (Bits) Value
seq12372 178 4e-40
seq7504 159 1e-34
>seq12372
Length=38393
Score = 178 bits (196), Expect = 4e-40
Identities = 242/333 (73%), Gaps = 6/333 (2%)
Strand=Plus/Minus
Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003
||| | || ||||||||| ||| | || ||| | |||||||||||||| |||| |
Sbjct 38321 GCCTAGCAACTGCATGGTGCCGTTGATGTCGACAATGATTTCAGTGGTGTAACGCTTGAT 38262
Query 26004 GCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTT 26063
||||||||| ||||||| |||||||| ||| | || || ||||| || ||||||||
Sbjct 38261 GCCGTCCTTCTCCCACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGCATTGGGAACCTTT 38202
Query 26064 CTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTC 26123
|||||||||||| |||||||| || |||||||| |||| | ||||| ||||| ||
Sbjct 38201 GCGCAGGTACTCGCCGGCGATCTCGGCCACCTTGCCGAACAACGACACGCGGTGCCACTC 38142
Query 26124 TGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCA--GCTTTCTGAGGTCGCTACG 26181
|| || ||| | ||||| ||||| ||| |||| ||| ||| || || | |
Sbjct 38141 GGTGCGCTCGACCTTCTGCCCGGTTTGCTTGTCGGTCCACTGCTCGCTG--GTGGCCAGG 38084
Query 26182 GTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGT-TCCCCAG 26240
| | ||| | || ||| ||| || |||| |||||||| || || || | ||| ||
Sbjct 38083 CTGAGGTTAGTTACCGCGTTGCCGTTTGGCAGGTAACGGACTTCGGGGTCCTGTCCGCAA 38024
Query 26241 GTTACCGACAAGGATTACTTTATTTACGCCGCG 26273
|| || || ||||| |||||||||||||| ||
Sbjct 38023 GTC-CCAACCAGGATCACTTTATTTACGCCACG 37992
>seq7504
Length=9783
Score = 159 bits (176), Expect = 1e-34
Identities = 238/333 (71%), Gaps = 6/333 (2%)
Strand=Plus/Minus
Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003
||| | || ||||||||| ||| | || || | ||||||||||||||||||| |
Sbjct 3136 GCCCAGCAGCTGCATGGTGCCGTTGATGTCAACGATGATTTCAGTGGTGTAGCGCTTGAT 3077
Query 26004 GCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTT 26063
|||||| |||||||||| ||||| | ||| | || || ||||| ||| ||||||||
Sbjct 3076 GCCGTCTTTTTCCCACTCACGGGTCTGCAGCTTGCCTTCGATGTAGCACTGCGAACCTTT 3017
Query 26064 CTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTC 26123
|||||||||||| || ||||| || |||||||| |||||| || || ||||||||
Sbjct 3016 GCGCAGGTACTCGCCGGCAATCTCAGCAACCTTGCCGAACAGCGACACACGGTGCCATTC 2957
Query 26124 TGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCA--GCTTTCTGAGGTCGCTACG 26181
|| || ||| | ||| | |||||| ||| |||| ||| || ||| || | |
Sbjct 2956 GGTACGCTCGACCTTCTGGCCCGACTGCTTGTCGGTCCATTGCTCGCT--GGTTGCCAGG 2899
Query 26182 GTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGT-TCCCCAG 26240
| | ||||| || || || || |||| ||| |||| || ||||| | || |||
Sbjct 2898 CTCAGGTTGGTCACGGCATTACCGTTGGGCAGGTAGCGGACTTCGGGATCCTGGCCACAG 2839
Query 26241 GTTACCGACAAGGATTACTTTATTTACGCCGCG 26273
| ||||||| || || ||||| || || || ||
Sbjct 2838 G-TACCGACCAGAATGACTTTGTTAACCCCACG 2807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159759311824358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |