Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq12372 178 4e-40 seq7504 159 1e-34 >seq12372 Length=38393 Score = 178 bits (196), Expect = 4e-40 Identities = 242/333 (73%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003 ||| | || ||||||||| ||| | || ||| | |||||||||||||| |||| | Sbjct 38321 GCCTAGCAACTGCATGGTGCCGTTGATGTCGACAATGATTTCAGTGGTGTAACGCTTGAT 38262 Query 26004 GCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTT 26063 ||||||||| ||||||| |||||||| ||| | || || ||||| || |||||||| Sbjct 38261 GCCGTCCTTCTCCCACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGCATTGGGAACCTTT 38202 Query 26064 CTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTC 26123 |||||||||||| |||||||| || |||||||| |||| | ||||| ||||| || Sbjct 38201 GCGCAGGTACTCGCCGGCGATCTCGGCCACCTTGCCGAACAACGACACGCGGTGCCACTC 38142 Query 26124 TGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCA--GCTTTCTGAGGTCGCTACG 26181 || || ||| | ||||| ||||| ||| |||| ||| ||| || || | | Sbjct 38141 GGTGCGCTCGACCTTCTGCCCGGTTTGCTTGTCGGTCCACTGCTCGCTG--GTGGCCAGG 38084 Query 26182 GTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGT-TCCCCAG 26240 | | ||| | || ||| ||| || |||| |||||||| || || || | ||| || Sbjct 38083 CTGAGGTTAGTTACCGCGTTGCCGTTTGGCAGGTAACGGACTTCGGGGTCCTGTCCGCAA 38024 Query 26241 GTTACCGACAAGGATTACTTTATTTACGCCGCG 26273 || || || ||||| |||||||||||||| || Sbjct 38023 GTC-CCAACCAGGATCACTTTATTTACGCCACG 37992 >seq7504 Length=9783 Score = 159 bits (176), Expect = 1e-34 Identities = 238/333 (71%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003 ||| | || ||||||||| ||| | || || | ||||||||||||||||||| | Sbjct 3136 GCCCAGCAGCTGCATGGTGCCGTTGATGTCAACGATGATTTCAGTGGTGTAGCGCTTGAT 3077 Query 26004 GCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTT 26063 |||||| |||||||||| ||||| | ||| | || || ||||| ||| |||||||| Sbjct 3076 GCCGTCTTTTTCCCACTCACGGGTCTGCAGCTTGCCTTCGATGTAGCACTGCGAACCTTT 3017 Query 26064 CTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTC 26123 |||||||||||| || ||||| || |||||||| |||||| || || |||||||| Sbjct 3016 GCGCAGGTACTCGCCGGCAATCTCAGCAACCTTGCCGAACAGCGACACACGGTGCCATTC 2957 Query 26124 TGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCA--GCTTTCTGAGGTCGCTACG 26181 || || ||| | ||| | |||||| ||| |||| ||| || ||| || | | Sbjct 2956 GGTACGCTCGACCTTCTGGCCCGACTGCTTGTCGGTCCATTGCTCGCT--GGTTGCCAGG 2899 Query 26182 GTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGT-TCCCCAG 26240 | | ||||| || || || || |||| ||| |||| || ||||| | || ||| Sbjct 2898 CTCAGGTTGGTCACGGCATTACCGTTGGGCAGGTAGCGGACTTCGGGATCCTGGCCACAG 2839 Query 26241 GTTACCGACAAGGATTACTTTATTTACGCCGCG 26273 | ||||||| || || ||||| || || || || Sbjct 2838 G-TACCGACCAGAATGACTTTGTTAACCCCACG 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159759311824358