Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq9203 408 1e-109 >seq9203 Length=13179 Score = 408 bits (452), Expect = 1e-109 Identities = 676/968 (70%), Gaps = 12/968 (1%) Strand=Plus/Minus Query 1507 TGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCA 1566 |||| || | || |||||||| || || | ||| || ||||||||||||| |||||| | Sbjct 11488 TGTATATGCGCCCGATATATTCACCCAGCACACCAATACCTATCAATTGAATGCCACCAA 11429 Query 1567 GGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATT 1626 | || |||| || || || || || || || ||||| ||| ||| || | || | || Sbjct 11428 GAAACAGAATGGAGACGAGTAGCGATGGATAACCAGGCACAGCATTACCCCAGATAACTT 11369 Query 1627 TATCAATAATCATCCATGCACCGTAAAGGAATGA-CA--TACCTGCAATAAACAATCCAA 1683 ||||||| | ||| | ||| || | ||||| || || || | |||||| || | Sbjct 11368 TATCAATTACCATGAAGCTACCATACAAAAATGAGCAGGTA---GCCACAAACAACCCTA 11312 Query 1684 TGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCTTCCAGCGCCAGAT 1743 || ||||||| | || || | | ||| || ||||||||||| | |||||||| Sbjct 11311 AATATGTCCATACTCTTAGAGGTACAGATGAAAAGCTGGTTATTCCTTCAATCGCCAGAT 11252 Query 1744 TCCATAATTTCCAGCCATTGAATTTTGAATCGCCGGCAACACGTTCGGCACGGGCATATT 1803 ||||||||||||||||||| || |||||||| || ||| | ||| || | | |||| Sbjct 11251 TCCATAATTTCCAGCCATTAAACTTTGAATCCCCAGCAGACCTTTCTGCTCTAGAGTATT 11192 Query 1804 TAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCC--TTCATAAACAAGTTGCG 1861 ||| | || | ||||||| |||| ||| | | || ||||||||||| ||||| Sbjct 11191 CAACCAGTTCAATATTTCCGCTTGCCCA--TGACAATATCCCTTTCATAAACAAATTGCG 11134 Query 1862 TTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAGTCGCCAAC 1921 || |||| | || | || ||||| || | | ||||| || || || || || Sbjct 11133 CTCAGGCAGCAGCTTAACATTTTCGACTGCCTCTCTTGACATTAGTCGGAAATCACCTAC 11074 Query 1922 ATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTG-CAGCTTATAAAACCACTCAGCTG 1980 ||| ||||| ||| | || | |||||||||||||| || || |||||||||||| |||| Sbjct 11073 ATTCTCTTCAATTCTCGGCGTACTGATTTTATTGTGGCATCT-ATAAAACCACTCGGCTG 11015 Query 1981 TCTTACGCTTCAACCTCCCATCAGTTGAGCGGTCTGAGCGCTTAGCCAGCACCATATCCG 2040 | || | ||||||| || | ||||| || | ||||| || | ||| | ||| | Sbjct 11014 TTTTCCTTTTCAACCAGTTTTCTTTAGAGCGATCAGTACGCTTGGCTAACACTACATCAG 10955 Query 2041 CGCCAGCCTGCCACTTCTCAATGAGATGGGGGATAACTTCTATCGGATCCTGTAAATCGA 2100 | || |||||| || ||| || | || || ||||| || |||||||| | ||| | Sbjct 10954 CCCCTAACTGCCATTTTCTAATAAGCTCTGGAATTACTTCAATGGGATCCTGAAGATCTA 10895 Query 2101 CATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTT 2160 ||||||| ||||| || ||||| || || |||| || | ||| || || || || || | Sbjct 10894 CATCAATTGGAATTACAGCATCTCCAGTCGCATATTCTATACCAGCAAATAGCGCTGGCT 10835 Query 2161 CTTTACCGAAGTTTCGCGTAAACGAAAGCGGAATAACGAGCGGATCAGATGCAGCTATTT 2220 |||||||||| ||||| || || |||| || || || ||| | | || || Sbjct 10834 CTTTACCGAAATTTCGGGTGAAGCTTAGCGCCATCACTAGACAATCTGCAGTCGCATATT 10775 Query 2221 TGTTAATTATTGATTCAGTCGCATCTTTGCTTCCGTCGTTGATGAAAACAATCTCAACTT 2280 | ||||| || | || || ||||| | || ||||| || ||||| | || || |||| Sbjct 10774 TATTAATAATCAACTCTGTTGCATCGTGACTACCGTCATTTATGAAGATTATTTCTACTT 10715 Query 2281 CATACGGTTTTAACTCTTCAAACTCGCGAACCGTTTTATAGAAAATAGGTATCGTGGCTT 2340 ||||| | ||||||| || ||||| | ||||||||| |||||||| | ||| Sbjct 10714 CATACTCGCTCAACTCTTTGTTTTCACGAACGGCTTTATAGAAGATAGGTATTGCATCTT 10655 Query 2341 CTTCATTGAAGACCGGAACGACTAACGAGATTTTCATTTCGCATCCCTAAAGACAATGAA 2400 |||||||||| || || || || || || |||||||||| ||| |||| ||||| | Sbjct 10654 CTTCATTGAAAACAGGTACAACCAATGATATTTTCATTTTTTATCTTTAAAAACAATCAG 10595 Query 2401 CTTTGAATAAATGAATCCGCATATCAGGCTGATAGCTGAAAAGGTGACAAGAGTAAGGAG 2460 ||||| |||| |||||| |||| ||| || || ||||| || | || || | | Sbjct 10594 TTTTGAGTAAAAGAATCCCACAATCAAGCTAATTGCAGAAAATGTTATCAGCGTTAAAAT 10535 Query 2461 TGGCGGCA 2468 ||||| || Sbjct 10534 TGGCGTCA 10527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128241211201540