Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq5804 251 2e-62 >seq5804 Length=1936 Score = 251 bits (278), Expect = 2e-62 Identities = 382/539 (71%), Gaps = 11/539 (2%) Strand=Plus/Minus Query 48548 GAGTGGGT--AAGCCGCCAAATCCTCAGCGATACCGGCAGCATCCATAACCCTGACCACG 48605 |||||| | |||||| | ||||| ||| || ||||||||||||||| ||||| | Sbjct 1231 GAGTGGCTCCAAGCCG--AGATCCTTGCCGACACGGGCAGCATCCATAACGAAGACCATG 1174 Query 48606 AACACCTGTTAGAGGCTGACCTCTGCTTCATGTGGGCGTC--CGATTCGTTCGCTAAGAA 48663 ||||| | || || ||| || | ||||||||||||| ||| ||||| ||| | Sbjct 1173 CCCACCTACTGGATGCAGACATCCGGGTCATGTGGGCGTCGTCGAGC--TTCGCCAAGCA 1116 Query 48664 AGGGCGGTATGTCCTCGGCCAAGCCGAGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAA 48723 || || ||||| || || |||||||||||| | ||||||||||||| |||||||| Sbjct 1115 GGGCCGCACAGTCCTGGGGCAGGCCGAGCAGGTAGCGTTCCGCGCCGGTGGCTGGCAGAA 1056 Query 48724 AGCCAGAATGGAACAGCAGATGTATGAATGGTTCGGGCGCATCCCGAAGTTCATCATCAC 48783 ||| | ||||| || |||||| ||| |||||||| | | ||| ||||||||||| Sbjct 1055 GGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGTGGTGTGCCGGCCTTCATCATCAC 996 Query 48784 GCTGGCAGCCGATTACTGCTCACAATGCAATGACCTCGAGTTCTGCGCACTGGTAGAGCA 48843 ||||| || || |||||| | || |||| ||| ||| ||||| || ||||||||||| Sbjct 995 CCTGGCTGCTGACTACTGCGCCCAGTGCAGCGACACCGACTTCTGTGCCCTGGTAGAGCA 936 Query 48844 TGAGCTTTACCACATCGCACAGGCCACCGATGATTTCGGAGCGCCTAAGTTCAACAAAGA 48903 |||||| |||||||||||||| ||||| ||| | | ||| ||| || | ||| || Sbjct 935 TGAGCTGTACCACATCGCACACGCCACGGATAAATACGGCCAGCCAGCCTTTACCAAGGA 876 Query 48904 GACCGGGCATCCATTGCTTACACTGCGCGGCCACGACGTCGAAGAATTCATTGGTGTCGT 48963 | || || ||| |||| || ||||| ||||| || ||| | ||||| || Sbjct 875 G---GGAGCGCCGAAGCTGGAGATGCGTGGTCACGATGTCGAGGAGTTCGTCGGTGTGGT 819 Query 48964 ACGTCGATACGGTGCCAGCAAAGAAGTACAGGAGCTTGTTGATGCGGCCAAAGCGCCAGC 49023 ||| || |||||||| ||| || || || | | | || ||||| || || || || Sbjct 818 ACGCCGCTACGGTGCGAGCCCTGACGTTCAAGCGTTGGTGGATGCAGCAAACAAACCCGC 759 Query 49024 AGAAGTGGCTCACATCGATATAGCCAGGTCATGCGGCACATGCATGTTAAAACTGGCCT 49082 || |||| | | | ||| | ||| | ||||| || || || | || ||||||| Sbjct 758 CGAGGTGGGGAAACTGAACATATCGAGGGCTTGCGGAACCTGTCTGCTCAAGCTGGCCT 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156992321360668