Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq6273 729 0.0 seq6500 390 3e-104 seq17200 132 1e-26 seq14219 123 6e-24 seq15216 107 5e-19 seq7971 87.8 5e-13 >seq6273 Length=5978 Score = 729 bits (808), Expect = 0.0 Identities = 1021/1419 (72%), Gaps = 25/1419 (2%) Strand=Plus/Plus Query 17568 GGGATAAATTCTGGCGGCTTAACCACCTGTACTGGATCACCGACAAACGCGGGAAGCCGG 17627 |||| |||| |||||| || ||| |||| |||| ||||| ||||| | || ||| || Sbjct 2728 GGGACAAATACTGGCGCCTGAACAACCTCTACTTCATCACGGACAAGCAGGGCAAGAAGG 2787 Query 17628 TACGTTTCAAAATGACCCCGGAGCAGTTGGCCTACTTCGAGGGGATGCATACACGAAACA 17687 | || ||| ||||| |||||| | | |||||| |||||||||| || || ||| Sbjct 2788 TCCGCTTCCGGATGACGGACGAGCAGGTCGAATACTTCCAGGGGATGCACACGCGGAACC 2847 Query 17688 TCATCCTGAAAGCGCGCCAGCTCGGTTTTACAACGCTG-GTG-TGCATCATTCAGCTCGA 17745 | |||||||| || || ||||| || || || || || ||| |||||||| |||||||| Sbjct 2848 TGATCCTGAAGGCCCGGCAGCTTGGCTTCACCAC--TGAGTGCTGCATCATCCAGCTCGA 2905 Query 17746 TGCCGCGCTCTTTGAGGGCGCAAAGTGCGCGCTTATCGCTCACACCCTCAATGACGCAAA 17805 ||||| || || ||| || |||||||| || |||||||||||||| || ||||| || Sbjct 2906 CGCCGCTCTGTTCGAGTCGGCCAAGTGCGCACTGATCGCTCACACCCTGAACGACGCCAA 2965 Query 17806 GCGCCTTTTCCGGGAGAAAATCAAATATGCCTATGATCGACTGCCTGCTGAGATCCGGGC 17865 ||| || |||||||||||| | || || || || || ||||| |||||||| || Sbjct 2966 GCGGCTGTTCCGGGAGAAAGTGAAGTACGCGTACGACAACCTGCCGAAAGAGATCCGCGC 3025 Query 17866 GGCTAATCCTGCGTCTAATGATGCCGCTGGCGAGCTGGTTTTTAAGAAGGGCGGCTCGCT 17925 || || || ||| || || ||||| || ||| |||| || | ||||||||||| || Sbjct 3026 CGCGAACCCCGCGAGCAACGACGCCGCCGGTGAGTTGGTATTCAGCAAGGGCGGCTCACT 3085 Query 17926 CTATGTTTCGACATCGTTTCGTGGCGGCACGCTGCGCTATCTTCATGTGTCCGAGTTCGG 17985 ||| || || |||||||| || ||||| ||||| || || || || ||||||||||| Sbjct 3086 CTACGTCAGTACCTCGTTTCGGGGTGGCACTCTGCGATACCTGCACGTTTCCGAGTTCGG 3145 Query 17986 GAAGATCTGCGCAAAGTACCCGGACAAGGCGCGCGAAATTGTCACTGGTGCTTTTGAAGC 18045 |||||||||||| |||| ||| |||||||||| || |||||||| ||||| ||||| || Sbjct 3146 GAAGATCTGCGCCAAGTTCCCACACAAGGCGCGGGAGATTGTCACGGGTGCCTTTGAGGC 3205 Query 18046 TGTTTCAACTGACTGTTTCACGACGATTGAAAGCACAGCAGAAGGCCGCGCGGGCTATTT 18105 ||| | |||||||||||| || ||||| || ||||||||||| || ||||| || Sbjct 3206 TGTGGCCACTGACTGTTTCGTCACCATTGAGTCGACGGCAGAAGGCCGGGCCGGCTACTT 3265 Query 18106 CTTCGATTATTGCCAGACTGCGGAAAAAGCGGC-GCTATCTGGTGCGCCCCTCTCTCAAC 18164 |||||| || | |||| || | | |||| || || || || | | | ||| | || Sbjct 3266 CTTCGAGTACTCGCAGAGCGCAG-AGAAGCAGCAACTGTCAGGCGTGGCTCTCGGCCTAC 3324 Query 18165 TGAGCTGGAAATTCTTCTTTTTCAGCTGGTGGATGAAC---CCCCAGTATGCAATCGACC 18221 || ||||| |||||||| ||||||||||||| ||| || | | || |||||| Sbjct 3325 TGGATTGGAAGTTCTTCTTCTTCAGCTGGTGGAACAACAAGGCCTACT-GGC--TCGACC 3381 Query 18222 CCGTAGAGCCGCTATCA---CAG--CGCCTGCGCGATTATTTCGATGAGCTGGAGGCAAA 18276 | | |||| |||| | | || ||| | ||| ||||||||| ||| || || Sbjct 3382 CGG--CCACCGCGATCATCCCTGGCCGGCTGACGGTTTACTTCGATGAGTTGGTAGCCAA 3439 Query 18277 GCACCG---CCTTACGCTCAACGACCGCCAGAAAGCGTGGTATCAGGCCAAAGAAACCAC 18333 |||| | | | ||| ||| ||||| || ||||| ||| ||||| | || Sbjct 3440 GCACGGGATCGTGACG---AACCCAGGCCAGCGCGCATGGTACGCGGCAAAAGAGAAGAC 3496 Query 18334 CCTCGGCGACGACATGAAACGGGAATACCCGTCTATCCCCGCCGAGGCGTTCCAGCAGTC 18393 ||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| Sbjct 3497 ACTCGGCGACGACATGAAGCGGGAATACCCGTCGATCCCCGCCGAAGCCTTCCAGCAGTC 3556 Query 18394 CGTTGAAGGCGCTTACTACGCGAAACAGTTCGCGTTTCTCTACGCACAGCGCCGCATCGG 18453 | || || || |||||||| | |||||||| || |||| | | ||||| || Sbjct 3557 GATCGAGGGTGCCTACTACGCCAGGCAGTTCGCCAAGCTATACGGTGATCAGCGCATTGG 3616 Query 18454 CCAGTTGCCGGATAACGATCACCTTCCTGTTTACACGTTCTGGGATATCGGCGTCGGTGA 18513 | | ||||||| ||| |||||| || ||| ||| | ||||| ||||||||| | || Sbjct 3617 CGTGCTGCCGGACAACAGTCACCTACCAGTTATCACCATTTGGGACATCGGCGTCAGCGA 3676 Query 18514 CTCAACGGCTATCTGGTTTGTGCGCGTGGTGGGGAACGAGTTCCACATCATCGACTACTA 18573 ||| || || || |||||||| || ||| || | ||| ||| | ||||||||||| Sbjct 3677 CTCGACAGCCATTTGGTTTGTCCGGCAGGTCGGCGAGCAGTATCACGTTATCGACTACTA 3736 Query 18574 CGAGAACAGCGGCGAAGGGCTTCGCCATTACATGAAGATCCTTAAAGAAAAGGGATACAC 18633 || ||| || ||||| | || || ||||||||| | || || || ||||| ||||| Sbjct 3737 CGGAAACTCAGGAGAAGGCTTGCGGCACTACATGAAGGTGCTCAAGGACAAGGGTTACAC 3796 Query 18634 CTACGCCGAACACTGGGCGCCCCACGATATAGACAACCGCGAGTTTGCGAACGACGGCAA 18693 |||| |||| ||||||| ||| ||||| || || ||||||||||| | | || | || Sbjct 3797 CTACTCCGAGCACTGGGGGCCACACGACATCGAGAACCGCGAGTTCGGAAGTGATGCAAA 3856 Query 18694 ATCCCGCCGCCAGCTTGCGCGTGAGGGTTATGAGGTGGACGGCGAAATCTATTCGATCTC 18753 | ||| | | || || || |||||||| | || ||| | || || || | Sbjct 3857 GACGCGCAAGGACATAGCTCGCGAAGGTTATGAAATCGATGGCCAGATATACCGCATGAC 3916 Query 18754 GTTCAGTGTGGTGCCGAAGCTCGGTGTTGCTGAGGGGATCGAGCTGGTGCGCGAAATCCT 18813 |||| || ||||||||| | || || | || || ||||||| || | || ||||| Sbjct 3917 GTTCCAAGTCGTGCCGAAGATTGGCGTAGACGACGGAATCGAGCAGGCAAGGGAGATCCT 3976 Query 18814 GCCCCGCTGCGCTTTTGACAGCGTGAAATGCGAGGAAGGGATAAGCCACCTGGAAGCCTA 18873 | |||||||| || || | || ||||||||||| || | | |||||| ||| Sbjct 3977 AGCGCGCTGCGCCTTCGATGAAGCCAAGTGCGAGGAAGGCATCACCTGCCTGGAGAACTA 4036 Query 18874 CCGCAAGGAGTGGGATGCCAAGCGCGGCTGCTGGAAAGACAACCCTTTGCACGACTACAC 18933 ||| || || ||||| | ||| |||||||||||||| || || | || |||| | Sbjct 4037 CCGAAAAGAATGGGACGACAAAAAGGGCTGCTGGAAAGATAAGCCGCTCCATGACTGGTC 4096 Query 18934 CTCGCACGCTTCGGACGGTTTCCGCTACTTCGCTGTAGC 18972 || ||||| | |||| ||||||||||||||||| || Sbjct 4097 ATCCCACGCCGCTGACGCCTTCCGCTACTTCGCTGTGGC 4135 >seq6500 Length=2387 Score = 390 bits (432), Expect = 3e-104 Identities = 418/549 (76%), Gaps = 4/549 (1%) Strand=Plus/Plus Query 17568 GGGATAAATTCTGGCGGCTTAACCACCTGTACTGGATCACCGACAAACGCGGGAAGCCGG 17627 ||||||| |||||| | ||| | || |||| ||||||||||| | || ||| | Sbjct 1836 GGGATAAGCGTTGGCGGTTGAACAATCTCTACTTCATCACCGACAAGCAGGGCAAGAAAG 1895 Query 17628 TACGTTTCAAAATGACCCCGGAGCAGTTGGCCTACTTCGAGGGGATGCATACACGAAACA 17687 | || ||| ||||| |||||| | | |||||||| ||||||||||| || |||| Sbjct 1896 TCCGCTTCCGGATGACGGACGAGCAGATTGAATACTTCGATGGGATGCATACCCGCAACA 1955 Query 17688 TCATCCTGAAAGCGCGCCAGCTCGGTTTTACAACGCTG-GTG-TGCATCATTCAGCTCGA 17745 |||||||||| || || |||||||| || || | ||| ||| |||||||| |||||||| Sbjct 1956 TCATCCTGAAGGCTCGGCAGCTCGGCTTCACTA--CTGAGTGCTGCATCATCCAGCTCGA 2013 Query 17746 TGCCGCGCTCTTTGAGGGCGCAAAGTGCGCGCTTATCGCTCACACCCTCAATGACGCAAA 17805 ||||| || || ||| || ||||||||||| |||||||||||||| || ||||| || Sbjct 2014 CGCCGCTCTATTCGAGTCGGCGAAGTGCGCGCTGATCGCTCACACCCTGAACGACGCCAA 2073 Query 17806 GCGCCTTTTCCGGGAGAAAATCAAATATGCCTATGATCGACTGCCTGCTGAGATCCGGGC 17865 |||||| ||||||||||| ||||||||||||| || |||||| ||||| || || Sbjct 2074 GCGCCTGTTCCGGGAGAAGGTCAAATATGCCTACGACAACCTGCCTAAAGAGATACGCGC 2133 Query 17866 GGCTAATCCTGCGTCTAATGATGCCGCTGGCGAGCTGGTTTTTAAGAAGGGCGGCTCGCT 17925 || |||||||| ||||| ||||| ||||| ||||| || || | || ||||| ||||| Sbjct 2134 CGCCAATCCTGCTTCTAACGATGCTGCTGGTGAGCTTGTGTTCAGCAAAGGCGGATCGCT 2193 Query 17926 CTATGTTTCGACATCGTTTCGTGGCGGCACGCTGCGCTATCTTCATGTGTCCGAGTTCGG 17985 ||| || || || || || || ||||| || || || ||||| || || ||||||||||| Sbjct 2194 CTACGTGTCCACGTCCTTCCGGGGCGGGACTCTACGGTATCTGCACGTATCCGAGTTCGG 2253 Query 17986 GAAGATCTGCGCAAAGTACCCGGACAAGGCGCGCGAAATTGTCACTGGTGCTTTTGAAGC 18045 |||||||||||| |||| || ||||||| | || || ||||| || || || || || Sbjct 2254 GAAGATCTGCGCCAAGTTTCCCCACAAGGCCAGAGAGATCGTCACCGGCGCCTTCGAGGC 2313 Query 18046 TGTTTCAACTGACTGTTTCACGACGATTGAAAGCACAGCAGAAGGCCGCGCGGGCTATTT 18105 ||| | || || || || ||||||||| || || || || || ||||||||||| Sbjct 2314 TGTCGCCACCGATTGCTTTGTCACGATTGAATCGACGGCGGAGGGGCGGGCGGGCTATTT 2373 Query 18106 CTTCGATTA 18114 |||||| || Sbjct 2374 CTTCGACTA 2382 >seq17200 Length=297 Score = 132 bits (146), Expect = 1e-26 Identities = 202/285 (71%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 18696 CCCGCCGCCAGCTTGCGCGTGAGGGTTATGAGGTGGACGGCGAAATCTATTCGATCTCGT 18755 ||||||| | | ||||| ||||| || ||| | |||||| | ||| || | | Sbjct 291 CCCGCCGGGAAATGGCGCGCGAGGGCTACGAGATCGACGGCCAGCACTACCGCATGACAT 232 Query 18756 T-CAGTGTGGTGCCGAAGCTCGGTGTTGCTGAGGGGATCGAGCTGGTGCGCGAAATCCTG 18814 | ||| || || |||||| |||| || | || || ||||| | | |||||| ||||| Sbjct 231 TTCAG-GTCGTTCCGAAGATCGGCGTGGACGACGGCATCGACCAAGCGCGCGAGATCCTC 173 Query 18815 CCCCGCTGCGCTTTTGACAGCGTGAAATGCGAGGAAGGGATAAGCCACCTGGAAGCCTAC 18874 | | |||||| |||||| | ||| ||||| || || || | | ||||| |||| Sbjct 172 GCTCACTGCGCCTTTGACGAGGCGAAGTGCGAAGAGGGCATCACCGCGCTGGAGAACTAC 113 Query 18875 CGCAAGGAGTGGGATGCCAAGCGCGGCTGCTGGAAAGACAACCCTTTGCACGACTACACC 18934 ||||| |||||||| | |||| ||||||||||||||||| || | ||||||| | Sbjct 112 CGCAAAGAGTGGGACGACAAGAAGGGCTGCTGGAAAGACAAGCCGCTTCACGACTGGGCG 53 Query 18935 TCGCACGCTTCGGACGGTTTCCGCTACTTCGCTGTAGCGATGAGC 18979 || ||| | || || | ||||| ||||||||||| || | |||| Sbjct 52 TCTCACCCGTCCGATGCATTCCGGTACTTCGCTGTCGCCAAGAGC 8 >seq14219 Length=2704 Score = 123 bits (136), Expect = 6e-24 Identities = 205/294 (70%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 33593 CGGCACCTGGGATGGCACGTTTAAATGGGCGTGGACGGATAACCCGGCCTGGGTGTTTTA 33652 ||||| ||||||||||| || ||| ||| | || | |||||||||||| | || || Sbjct 1789 CGGCATTTGGGATGGCACATTCAAAGAGGCCTATACCAACAACCCGGCCTGGATCTTCTA 1730 Query 33653 CGACCTGGTGAT-CACTGATCGCTTCGGACTCGGCGACCGGCTGGACGCCGATAACGTGG 33711 |||| ||||| | ||| || || ||| ||||||||||| | ||||| | || | Sbjct 1729 CGACTTGGTGCTGCACCCATA-CTACGGCCTCGGCGACCGCATCGACGCAACAATGGTTG 1671 Query 33712 ACAAATGGGCGCTCTACCAGGTGGCGCAATACTGCGATCAGATGGTGCCGGACGGCAGGG 33771 | ||| ||||||| | | | ||||| |||||||| ||||||||||||||||| | || Sbjct 1670 ATCGCTGGTCGCTCTATCGGATCGCGCAGTACTGCGACCAGATGGTGCCGGACGGAAAGG 1611 Query 33772 GCGGCGACGGCAAAGAGCCACGCTATATGTGCAACGTCTACGTGCAGAGCCGGGCCGACG 33831 | |||| |||||||||| || |||||| | ||| | |||| | || || | Sbjct 1610 G------GGGCATGGAGCCACGCTTTACCTGCAACTTGTACTTCCAGAAGCAAGCTGAAG 1557 Query 33832 CATTCACGGTTTTGCGCGACTTTGCGGCCATCTTCCGGGGCATGACTTACTGGG 33885 | | | || | | ||| | || | ||||||| ||| || | ||||||| Sbjct 1556 CTTATGCAGTGCTCCAGGACCTGGCCTCGATCTTCCACGGCCTGGCCTACTGGG 1503 >seq15216 Length=457 Score = 107 bits (118), Expect = 5e-19 Identities = 281/427 (66%), Gaps = 14/427 (3%) Strand=Plus/Minus Query 33564 AACTATGACCCCGACACCCGCAGCTATACCGGCACCTGGGATGGCACGTTTAAATGGGCG 33623 ||||| ||||| | | |||| |||| ||| | ||||| || || || || ||| Sbjct 441 AACTACGACCCAGTTTCGCGCACATATAGCGGAATTTGGGACGGGACATTGAAGGAGGCT 382 Query 33624 TGGACGGATAACCCGGCCTGGGTGTTTTACGACCTGGTGATCACTGATCGCTTCGGACTC 33683 | || | ||||| |||||| |||| | | | || |||||||||||| || Sbjct 381 TATACCAACAACCCTACCTGGGCTACCTACGGCATTACCACCATTGATCGCTTCGGCCTT 322 Query 33684 GGCGACCGGCTGGACGCCG-ATAACGTGGACAAATGGGCGCTCTACCAGGTGGCGCAATA 33742 ||| | || | |||| | |||||||| |||| ||| |||| | | | || || Sbjct 321 GGCCGGC-GCATCAAGCCGTGGATGGTGGACAAGTGGGAGCTTTACCGGATTTCCCAGTA 263 Query 33743 CTGCGATCAGATGGTGCCGGACGGCAGGGGCGGCGACGGCAAAGAGCCACGCTATATGTG 33802 ||||| || |||| |||||||| | ||| ||| | ||||| |||| || || Sbjct 262 TTGCGACCAACTGGTACCGGACGGGAAGGG------TGGCCAGGAGCCGCGCTTCATCTG 209 Query 33803 CAACGTCTACGTGCAGAGCCGGGCCGACGCATTCACGGTTTTGCGCGACTTTGCGGCCAT 33862 |||| | || |||||||| ||| || || | || | ||||| ||| | |||| || Sbjct 208 CAACCTGAACCTGCAGAGCAAGGCTGATGCCTGGTCGCTGTTGCGTGACATCTCGGCAAT 149 Query 33863 CTTCCGGGGCATGACTTACTGGGGTGGCGATCAGCTCGTTACGCTGGCAGACATGCCGCG 33922 || || |||||||| || |||| | ||| || | || |||| || |||||||| Sbjct 148 CTATCGAGGCATGACCTATTGGGCCCAGGGCCAGGTCTTCACCTTGGCTGATATGCCGCG 89 Query 33923 C------GATGTTGATTATGTCTACACGCGCGCGAATGTGGTTGAAGGGCGCTTCACTTA 33976 | || | || | || |||||| |||||||| || | || || ||||| || Sbjct 88 CGCTACTGACTTCGACTTTGCCTACACCCGCGCGAACGTCATCGACGGCAAGTTCACCTA 29 Query 33977 CGCCAGC 33983 | ||||| Sbjct 28 CTCCAGC 22 >seq7971 Length=25187 Score = 87.8 bits (96), Expect = 5e-13 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 11323 CAAAGCCGCGCGCGGCATCGAGTGCCAGGTACGCATTCCCGGCGTCTGTAATCACAACCC 11382 ||| |||||||| ||| ||||||||| || || || || ||||| || || ||| || Sbjct 19983 CAAGGCCGCGCGTGGCCGCGAGTGCCAAGTGCGTATCCCAGGCGTGTGCAACGGCAATCC 20042 Query 11383 CGAAACCAGCGTGCTGGCGCATATCCGCCTGCCCGGCACCTGCGGGATGGGGATCAAGCC 11442 ||| || | ||| || ||||| |||| || | |||||||||||||| || | || || Sbjct 20043 CGAGACTACCGTCCTTGCGCACTACCGCTTGGCAGGCACCTGCGGGATTGGCAAGAAACC 20102 Query 11443 GCCTGATCTGCTGGGAG-CTATAGCGTGCAGCGCCTGTCACGACG 11486 || ||| ||| ||| | || || |||||| | || || |||| Sbjct 20103 GCATGACTTGCAGGGCGCCTGGTGC-TGCAGCTCGTGCCATGACG 20146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127748590934016