Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq24420 91.5 1e-13 seq29157 89.7 4e-13 seq10790 87.8 1e-12 seq451 82.4 6e-11 >seq24420 Length=3268280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | |||| |||| || Sbjct 2497470 TGTAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGT 2497529 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| | | | ||| || ||||| ||| ||||||||||||| || || || Sbjct 2497530 TTGCCTGCAAAGAGGAGCCTCTGCTGGTCGGGGGGA-TGCCTTCTTTATCCTGGATCTTG 2497588 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| |||||||| | || || || || |||| || |||| ||| Sbjct 2497589 GCCTTCACA--TTCT-CAGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCAGGTC 2497645 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 2497646 AGGGTCTTCACGAAGATCTGCAT 2497668 >seq29157 Length=6873498 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || ||||| || ||||| || | | ||| | |||| |||| |||||| || Sbjct 2566408 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCA 2566467 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| |||| | || || || || || || |||||||||||||| || || ||| Sbjct 2566468 GCAAAGATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTT 2566527 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| |||||| || || || | ||| || | ||||||| || || || || | || Sbjct 2566528 ACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTC 2566587 Query 101453 TTTACAAATATCTGCAT 101469 || | || |||||||| Sbjct 2566588 TTCATGAAAATCTGCAT 2566604 >seq10790 Length=2053270 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| ||||| || || |||||||| | ||||| | | | || |||| || Sbjct 1303337 TGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCCAGCTGT 1303278 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| | | | ||| || || || || |||||||||||||| || || || Sbjct 1303277 TTGCCTGCAAACGTGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTG 1303218 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | | | |||||| | ||||| || || |||| || ||||| || Sbjct 1303217 GCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTC 1303158 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || | || |||||||| Sbjct 1303157 AGGGTCTTCCCGAAGATCTGCAT 1303135 >seq451 Length=5792110 Score = 82.4 bits (90), Expect = 6e-11 Identities = 118/166 (71%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || ||||| || ||||| || | ||| | |||| |||| ||| Sbjct 4044016 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACATCCATCTTCCACTTG 4044071 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| | || || || || ||||| ||||| ||||| || || || Sbjct 4044072 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 4044131 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||| ||||| || || || | ||| ||||||||||| Sbjct 4044132 GGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAGCTTCAAGAGTG 4044177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396130067174541