Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq24420 91.5 1e-13
seq29157 89.7 4e-13
seq10790 87.8 1e-12
seq451 82.4 6e-11
>seq24420
Length=3268280
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/203 (71%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | | ||| | | |||| |||| ||
Sbjct 2497470 TGTAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGT 2497529
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| |||||||| | | | ||| || ||||| ||| ||||||||||||| || || ||
Sbjct 2497530 TTGCCTGCAAAGAGGAGCCTCTGCTGGTCGGGGGGA-TGCCTTCTTTATCCTGGATCTTG 2497588
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| |||| |||||||| | || || || || |||| || |||| |||
Sbjct 2497589 GCCTTCACA--TTCT-CAGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCAGGTC 2497645
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 2497646 AGGGTCTTCACGAAGATCTGCAT 2497668
>seq29157
Length=6873498
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332
|| || || ||||| || ||||| || | | ||| | |||| |||| |||||| ||
Sbjct 2566408 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCA 2566467
Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392
||||| |||| | || || || || || || |||||||||||||| || || |||
Sbjct 2566468 GCAAAGATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTT 2566527
Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452
||| |||||| || || || | ||| || | ||||||| || || || || | ||
Sbjct 2566528 ACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTC 2566587
Query 101453 TTTACAAATATCTGCAT 101469
|| | || ||||||||
Sbjct 2566588 TTCATGAAAATCTGCAT 2566604
>seq10790
Length=2053270
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| |||||||| ||||| || || |||||||| | ||||| | | | || |||| ||
Sbjct 1303337 TGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCCAGCTGT 1303278
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| |||||||| | | | ||| || || || || |||||||||||||| || || ||
Sbjct 1303277 TTGCCTGCAAACGTGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTG 1303218
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | | | |||||| | ||||| || || |||| || ||||| ||
Sbjct 1303217 GCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTC 1303158
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || | || ||||||||
Sbjct 1303157 AGGGTCTTCCCGAAGATCTGCAT 1303135
>seq451
Length=5792110
Score = 82.4 bits (90), Expect = 6e-11
Identities = 118/166 (71%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
|||||| || || || ||||| || ||||| || | ||| | |||| |||| |||
Sbjct 4044016 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACATCCATCTTCCACTTG 4044071
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| |||| | || || || || ||||| ||||| ||||| || || ||
Sbjct 4044072 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 4044131
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431
|||||| ||||| || || || | ||| |||||||||||
Sbjct 4044132 GGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAGCTTCAAGAGTG 4044177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396130067174541
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |