Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq3579 98.7 2e-15 seq11692 96.9 8e-15 seq14890 89.7 1e-12 >seq3579 Length=358 Score = 98.7 bits (108), Expect = 2e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 324508 AGTATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGG 324567 || ||| ||||| ||||||||| |||||||||| |||||||||||| || |||||| ||| Sbjct 197 AGAATACGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGG 138 Query 324568 TTCGAACCCGTTTAGCTCCACAAA 324591 ||||| |||| || ||||||| || Sbjct 137 TTCGATCCCGCTTGGCTCCACCAA 114 >seq11692 Length=22366 Score = 96.9 bits (106), Expect = 8e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 324511 ATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTC 324570 || |||||||||||||||| |||||||||| |||| | ||| | || |||||| |||||| Sbjct 7750 ATCTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTC 7691 Query 324571 GAACCCGTTTAGCTCCACAAAGTACT 324596 || |||| |||||||||| || |||| Sbjct 7690 GATCCCGCTTAGCTCCACCAATTACT 7665 Score = 96.9 bits (106), Expect = 8e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 324511 ATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTC 324570 || |||||||||||||||| |||||||||| |||| | ||| | || |||||| |||||| Sbjct 7995 ATCTGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTC 7936 Query 324571 GAACCCGTTTAGCTCCACAAAGTACT 324596 || |||| |||||||||| || |||| Sbjct 7935 GATCCCGCTTAGCTCCACCAATTACT 7910 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 324514 TGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAA 324573 |||||||||||||||| |||||||||| |||| | ||| | || |||||| |||||||| Sbjct 8268 TGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGAT 8209 Query 324574 CCCGTTTAGCTCCACAAA 324591 |||| |||||||||| || Sbjct 8208 CCCGCTTAGCTCCACCAA 8191 >seq14890 Length=1707 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| ||| | ||| | | ||||||||||||||| | Sbjct 606 GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAACGGTTCGATC 665 Query 324575 CCGTTTAGCTCCACAAA 324591 |||||||||||||| || Sbjct 666 CCGTTTAGCTCCACCAA 682 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| ||| | ||| | | ||||||||||||||| | Sbjct 887 GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAACGGTTCGATC 946 Query 324575 CCGTTTAGCTCCACAAA 324591 |||||||||||||| || Sbjct 947 CCGTTTAGCTCCACCAA 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147138811343074