Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq27765 86.0 1e-11 seq152 86.0 1e-11 seq12812 84.2 4e-11 >seq27765 Length=25252 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 132949 GCTCCAAGTTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGG 133008 || ||| |||| |||||||||||||| |||||||||| ||||||||||| |||| Sbjct 25102 GCCCCAGCTTTGTCGCGGGGTGGAGCAGCTTGGTAGCTCGTCGGGCTCATAACCCGAAGG 25043 Query 133009 TCGAGGGTTCAAATCCCTCCCCCGCATCCA 133038 ||| ||||||||||| |||||||| ||| Sbjct 25042 TCGTTGGTTCAAATCCAGCCCCCGCAACCA 25013 >seq152 Length=9724 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 132959 TGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTC 133018 ||| ||||| |||||||||| |||||||||| ||||||||||| ||||||| ||||| Sbjct 823 TGACGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTC 764 Query 133019 AAATCCCTCCCCCGCATCCA 133038 |||||| | |||||| ||| Sbjct 763 AAATCCGGCTCCCGCAACCA 744 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || ||||| |||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct 1059 GACGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCA 1000 Query 133020 AATCCCTCCCCCGCATCCA 133038 ||||| | |||||| ||| Sbjct 999 AATCCGGCTCCCGCAACCA 981 >seq12812 Length=1778 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || ||||| |||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct 386 GACGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCA 327 Query 133020 AATCCCTCCCCCGCATCCA 133038 ||||| | |||||| ||| Sbjct 326 AATCCGGCTCCCGCAACCA 308 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || ||||| |||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct 629 GACGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCA 570 Query 133020 AATCCCTCCCCCGCATCCA 133038 ||||| | |||||| ||| Sbjct 569 AATCCGGCTCCCGCAACCA 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895422504081960