Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq4948 192 2e-44 seq4096 87.8 5e-13 seq9311 84.2 6e-12 >seq4948 Length=1101 Score = 192 bits (212), Expect = 2e-44 Identities = 244/332 (73%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 8322 CAGGCTCTTGGTCGACTCAAAACAGGCCAGATGAACAAAACAGAATCNTGCGTATTGCCA 8381 || || || || || |||||||| ||| |||||||||| || ||| | ||||| | Sbjct 216 CAAGCGCTCGGCCGGCTCAAAACCGGCGAGATGAACAAGACCGAAGCG-GCGTACATGGA 274 Query 8382 GTACCTTGAGCAGCGTAAACGTGCAGGGGAAGTCGCCTGGTATCGGTTCGAGGGTATCAA 8441 |||||| | | || | | ||| | |||| |||| |||||| || ||||| Sbjct 275 GTACCTGAAAGACCGCCAGTTCGTTGGGCACATCGCATGGTTCAAGTTCGAAGGGATCAA 334 Query 8442 GCTGCGGCTGGCTGACAACACGTTCTATACGCCCGATTTTGCTGTGATGCTCGCCACCGG 8501 |||||| || ||||||||||||||||| |||||||| || || || |||||||| ||| Sbjct 335 GCTGCGCCTCGCTGACAACACGTTCTACACGCCCGACTTCGCCGTAATGCTCGCTGACGG 394 Query 8502 CGAGATGGAACTGCACGAAGTGAAAGGTTTCTGGACCGACGACGCCAGGGTGAAAACCAA 8561 || ||||| ||||||| || || || ||||||||||| |||||||||||||||||||| Sbjct 395 CGCCATGGAGTTGCACGAGGTCAAGGGCTTCTGGACCGATGACGCCAGGGTGAAAACCAA 454 Query 8562 AGTCGC-CGCAGATCAGTATCCGTTCCGAATCATCGGGGTAACGGTTAAGCCAAAGAAAG 8620 || ||| | ||| | ||||||||||| ||| ||| || || | ||| | || || Sbjct 455 AGCCGCGCCCAG-CCTGTATCCGTTCCAGATCGTCGCAGTCACTGCCAAGACCAAAAAGT 513 Query 8621 CAGGTGGTGGCTGGAACATCGAAGAGTTCTGA 8652 | || || |||||| | ||| |||||||| Sbjct 514 CTGGCGGCGGCTGGGCATTTGAAAAGTTCTGA 545 >seq4096 Length=1707 Score = 87.8 bits (96), Expect = 5e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 14432 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 14489 ||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||| Sbjct 1572 CAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATCCAACTGAGCTA 1515 >seq9311 Length=16340 Score = 84.2 bits (92), Expect = 6e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 14431 GCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 14489 |||||| ||||||||||||||| ||||||||||||||| |||||| |||| |||||||| Sbjct 3971 GCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTA 3913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143134977211876