Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_019514.1 Length=74669 Score E Sequences producing significant alignments: (Bits) Value seq14401 129 3e-25 seq13667 109 3e-19 >seq14401 Length=13065 Score = 129 bits (142), Expect = 3e-25 Identities = 173/239 (72%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 17083 TGGCCTTGGGCATAAATCTGGCATTGTACTTGGGAACCTGGTGGGTCTGATTGATTCGGA 17142 ||| || || ||||| ||| ||||||||||| || |||||||| |||||||| || || Sbjct 12811 TGGACTGGGTCATAAGCATGGGATTGTACTTGGTAATCTGGTGGGCCTGATTGACTCAGA 12870 Query 17143 CTATCAGGGTGAGCTGAAGGTTTCCCTGTGGAACCGCAGCGCTGAACCA-----TACACT 17197 ||||||||| ||||| | ||| || | |||||||| || | | || |||||| Sbjct 12871 CTATCAGGGCGAGCTTATGGTATCTGTCTGGAACCGTAG---TCAGACAGTTTTTACACT 12927 Query 17198 GTCAGCCCTGGTGAGCGTGTTGCCCAAATGGTTATCGTGCCAGTAGTGCAGGCACAGTTT 17257 | | ||||||||||| | || ||| || | || || ||||| ||| |||| ||| Sbjct 12928 GGAA--CCTGGTGAGCGCCTAGCTCAATATGTACTGGTTCCTGTAGTCCAGACACAATTT 12985 Query 17258 GAGCTGGTTGATGAATTCACTGCTTCAGAACGTGGAGACGGCGGATTTGGCCACACCGG 17316 || | || ||||||| |||| || || || ||| ||||| |||||||| ||||| Sbjct 12986 GAACAAGTGAATGAATTTACTGTATCCGAGCGGGGAACTGGCGGTTTTGGCCATACCGG 13044 >seq13667 Length=755 Score = 109 bits (120), Expect = 3e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 17048 GACCCTGGTTATGCTGCTGTGCTGCTGCCTCGCAGTGGCCTTGGGCATAAATCTGGCATT 17107 ||||| ||| ||| || | ||||||| ||| ||||| || || || |||||| Sbjct 312 GACCCGGGTCTTGCCGCACTCGTGCTGCCGCGCTCGGGCCTGGGCCACAAGCATGGCATC 253 Query 17108 GTACTTGGGAACCTGGTGGGTCTGATTGATTCGGACTATCAGGGTGAGCTGAAGGTTTCC 17167 || || || |||||||| || ||||| ||||||||||| ||||| || |||| ||| || Sbjct 252 GTGCTGGGCAACCTGGTCGGGCTGATCGATTCGGACTACCAGGGCGAACTGATGGTGTCG 193 Query 17168 CTGTGGAACCGCAGCGCTGAACCATACACTGTCAGCCCT-GGTGAGCGTGTTGCCCAAAT 17226 ||||||||| || | | | ||| || || | ||||||||| | ||||| | Sbjct 192 TGCTGGAACCGCGGCACCACCGCCTTCACCATC-GCTGTCGGTGAGCGTATCGCCCAGCT 134 Query 17227 GGTTATCGTGCCAGTAGTGCAGGCACAGTTTGAGCTGGTTGA 17268 ||| ||||||| || || ||||| ||||| ||| | || || Sbjct 133 GGTGCTCGTGCCCGTGGTACAGGCGCAGTTCGAGATCGTCGA 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238726607663590