Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq5775 237 5e-58 >seq5775 Length=7611 Score = 237 bits (262), Expect = 5e-58 Identities = 518/768 (67%), Gaps = 16/768 (2%) Strand=Plus/Plus Query 31083 AGCAAGAGTTAGGATTACTAAAACTTGCTCAGGAACAGCGGTTGTTTCAGGCTGAGCAAT 31142 |||||||| | | || | || || |||||||| || || | ||| | ||||| || | Sbjct 24 AGCAAGAGCTTGCATGGATGAAGCTGGCTCAGGAGCAACGTATCTTTGAAGCTGAACAGT 83 Query 31143 TCATGCTGGGAGAAATGGAGCGTATCAAAAAACGTTATGCGCTTGAGTATGATGAAATAT 31202 ||||| |||| ||||||||||| | || ||||| ||||| ||||| ||| |||||| Sbjct 84 TCATGATGGGTGAAATGGAGCGCCTTAAGAAACGCTATGCCTTTGAGCATGCTGAAATCG 143 Query 31203 CAAAAATCACTGATCTTGAAGAGCGTAGAAGGAAGATGAGTGCATTTCAGGCTGATTTTA 31262 | ||||| || ||| | ||||| ||||| | ||| | | ||| || | ||| |||||| Sbjct 144 CTAAAATTACAGATGTGGAAGAACGTAGGCGCAAGTTCAATGCTTTGAATGCTAATTTTA 203 Query 31263 TTCGTAATGGTGTGGGGAATCCAACAATTGATCAGTATGATACCTCTAGTCAGTTTCTTA 31322 || || |||||| || | ||| | ||||| | || |||||| | || || | | Sbjct 204 TTAGTGGTGGTGTAGGTATGCCATCCTCTGATCCTAACGACACCTCTGGCCAACTTTTAA 263 Query 31323 AATCGACAAACTA--CACCAAGCCCAAGCAAACCAATATGCAAGTATTGGATGAAGATTA 31380 |||| | ||||| || || |||| |||| ||||| ||| |||| ||||| ||| | Sbjct 264 AATCAATGAACTATGCAGCAGTGCCAA--AAACTAATATACAAATATTAGATGAGGATAA 321 Query 31381 CGCTCAAACTTATCAAAAGTTGAAAGATAATCTTGCAGCTGTTTTGGAGTCTGAAAAAGC 31440 || ||| | || ||| | | |||||||| || |||||| | |||| | Sbjct 322 TGCCAGAACATTGCAGAAGCTCAGGGATAATCTGGCTGCTGTTAAGTTAGCTGAGGGAAT 381 Query 31441 TAGTTATCAGGAACGATTGGAGGCGGAGCGCGTATTCAAAGAAGCAAGACAGCAAATGGA 31500 ||| || |||| |||| ||||| || | || || | | || |||||| | | Sbjct 382 CAGTCATGAGGAGAGATTAGAGGCTGAAAGAGTTTTTCTTGCAAAAAAACAGCAGTTACA 441 Query 31501 TAATGAGTACCACCTGAAGGCGATTGATGCAAGAAAAGCAGATCACGACAGTCAATTGCA 31560 ||||||| | | ||||| | ||||| | ||||| ||||| || | ||| |||| Sbjct 442 AGATGAGTATGATTTTAAGGCTTTCGATGCTCGTAAAGCGGATCAAGAAAATCAGATGCA 501 Query 31561 ATTATACAGTCAGATGATTTCATCTGCTTCAAGCACATGGGGAGGTTTAACTCAA----A 31616 || || ||| ||||||||||||||||||| ||||||||| | || || ||| | Sbjct 502 GTTCTATGAACAGTTGATTTCATCTGCTTCAAGTACATGGGGAAGCTTGAC-CAATATGA 560 Query 31617 TTGTTAAGGATGCGCGTGGTGAAAATTCACGCTCTTTCAAGGCAATGTTTATAGCTCAAC 31676 ||| | || | | | |||||| || | | || ||||||||| ||||||| Sbjct 561 TTGGTCAGTACAAG---GATGAAAACTCTAAAACCTATAAAGCAATGTTTGCGGCTCAAC 617 Query 31677 AATCCTTTGCTATTGCTTCTGCGATTATCTCTGCTCATTTGGCAGCTACACAAGTAGCTG 31736 || | ||||| ||||| ||||| ||| | | | | |||||||| | ||| | Sbjct 618 AAGCTTTTGCAATTGCATCTGCTATTGTTAATACGGAATTGGCAGCCTCCAAAGCAATGA 677 Query 31737 CTGATGCAACGATCCCATTTT-TTGGGGCAA-AAATTGCGGCTTCAACCGCCATGCTTGC 31794 ||| | || ||| |||| || || ||| | ||| || ||| || || | ||| Sbjct 678 CTGCTCCA--GATGTGGTTTTGTTTGGACAACAGATTAGTGCACAAACTGCTATCCGTGC 735 Query 31795 TATGGGATATGCAAATGCTGGTTTGATTGCTGGGCAAACAATAGCTGG 31842 ||||| ||||| | |||||||||||| ||||| | || ||||| Sbjct 736 CATGGGTTATGCTTCAGTTGGTTTGATTGCAGGGCAGGCTATTGCTGG 783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144990300297356