Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq17517 421 2e-113 seq3336 246 7e-61 seq14071 140 8e-29 seq19217 109 1e-19 >seq17517 Length=1011 Score = 421 bits (466), Expect = 2e-113 Identities = 635/898 (71%), Gaps = 6/898 (1%) Strand=Plus/Minus Query 4444 AGGCGACCGGAAAATTCAACGCGAAAGCAGAAGACGCACTCAAAGAGGCGCAGAAGTCAG 4503 |||| |||| |||||| | | || ||| |||| || || ||| |||| | | Sbjct 913 AGGCCACCGACGAATTCAGCAAACAGGCTGAAAACGCGCTGTCGGAAGCGAAGAAAGCTG 854 Query 4504 GCAGGCTGTCAGAAGAAACAAAAGCTGCCGTTGATAAAATGGCTTCTGA-GTTCAATGCG 4562 || ||| || ||||| || || || || ||| | ||||| |||| |||||| Sbjct 853 GCTCGCTTTCTACCGAAACCAAGGCCGCTGTCGATGAGATGGCC-CTGAAGTTCAACAGC 795 Query 4563 CTGCGTGAAGCTGAAAAAACCCTGAAGGCCGCAATGGGCGAACTGGAGCAACATGTTGCC 4622 ||| |||||||| || ||||||||| | || |||||||| || | | ||| Sbjct 794 CTGACCGAAGCTGAGAAGCAACTGAAGGCCCAGCTCGGAGAACTGGAACAGGAGTTCGCC 735 Query 4623 CAGATGCCACTGGCCAA--CGCTGCAAATGTGATCGAGACCGTTGGCCAGACAGTCATCA 4680 | || || | ||| ||| || | | | ||| ||| | ||| || ||||||| Sbjct 734 CGAATTCC--TACCCAGGCCGCCGCCACTCAGCGCGAAACCCTCGGCGGCACCGTCATCA 677 Query 4681 GCAGCGAAGCACTGAAAGCATTCGCGGCAAGCGTGGAAGGCGGTAAGCGCGTCAGCGTAC 4740 |||||||| ||| | |||||| ||| | ||||| ||||| ||||| | Sbjct 676 AAAGCGAAGCTCTGGCCGAATTCGCAAAGAGCATTCAAGGCAACCGCCGCGTAAGCGTGC 617 Query 4741 CGGTGAACGCCGCGCTTATTTCCACGGATGTCGTCACCGGCGTGGTTGAACCGCAGCGTC 4800 | || |||||||| | | ||| | || | | ||||| || || || ||||| | Sbjct 616 CAGTTCACGCCGCGTTGCTCAGCACCGGCGTTGCCGAAGGCGTAGTGGAGCCACAGCGCC 557 Query 4801 TGCCGGGTATCGACACCGCACCGAAACAGCGCCTTTTCATCCGCGATCTGATCGCGCCTG 4860 |||| |||||||| ||||| ||||| || |||||||| |||||||| ||||| | Sbjct 556 TGCCAGGTATCGATGTGATGCCGAAGCAGCGACTGTTCATCCGTGATCTGATAGCGCCGG 497 Query 4861 GCCGCACCTCAGCACCGGCCATCTTCTGGGTGCAGCAAACCGGCTTCACCAATGCGGCGA 4920 |||||||| | | ||||| |||||||||||||| || |||||||||||||| || || Sbjct 496 GCCGCACCACTTCCCCGGCAATCTTCTGGGTGCAACAGACCGGCTTCACCAACGCCGCAC 437 Query 4921 AAGTTGTGCCGGAAGGCACCGCCAAGCCGTACAGCGATATCCAGTTCGCCACGCAGATCA 4980 ||||| | ||| |||| || ||||||||||| ||||||||| ||| |||||| Sbjct 436 GCGTTGTCGCTGAAAACACCCAGAAACCGTACAGCGACATCCAGTTCAACACCAAGATCA 377 Query 4981 CGCCGGTCACCACCATCGCGCACATGTTCAAGGCGTCCAAACAGATTCTGGATGACTTCG 5040 ||||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| Sbjct 376 CGCCGGTTACCACCATCGCGCATATGTTCAAGGCCTCCAAGCAGATCCTGGACGACTTCG 317 Query 5041 CGCAGCTGCAGTCCACTATCGACGCCGAGATGCGTTACGGACTGAAGTATGTGGAAGAAC 5100 | || ||||| || || |||||||| || ||||| ||||| ||||| || | ||||| Sbjct 316 CCCAACTGCAATCGACCATCGACGCAGAAATGCGCTACGGCCTGAAATACGCCGAAGAGT 257 Query 5101 AGGAAATTCTCTTTGGCGACGGTACCGGTGCGCACCTGAAAGGCATCGTTCCGCAGGCCT 5160 ||| || | || || ||||| || || | |||||| | |||||||| ||||| || Sbjct 256 CGGAGATCTTGTTCGGTGACGGCACTGGCGTGCACCTCCACGGCATCGTGCCGCAAGCAG 197 Query 5161 CGGCATACGAGGCTGCGTTCGCCGTAGAACAACAGAACGGCATCGACGATCTGCGCCTCG 5220 || || ||| ||||||| || || | |||||| | |||||||| | Sbjct 196 AAGCTTATTCGGCAGCGTTCGAGCCTGACGCTATGACCCAGATCGACCAGCTGCGCCTGG 137 Query 5221 CAATGCTGCAGGCTCAGCTGGCACGCTTCCCGGCTTCCGGCCACGTCCTGCACTTCATCG 5280 | ||||| ||| | || ||||| ||||| ||||| ||| ||||| || ||||||| | Sbjct 136 CGATGCTCCAGTCGCAACTGGCGCGCTTGCCGGCCAGCGGTCACGTGCTCCACTTCACTG 77 Query 5281 ACTGGGCGAAGATTGAACTCACCAAAGACACGCTGGGCCGCTATATCCTGGCGAACCC 5338 | ||||||||||| || |||||||| ||||| ||||| || || ||| | | ||||| Sbjct 76 ATTGGGCGAAGATCGAGCTCACCAAGGACACCCTGGGTCGATACATCATCGGCAACCC 19 >seq3336 Length=1417 Score = 246 bits (272), Expect = 7e-61 Identities = 338/469 (72%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 2922 CCTTTACCGGTTCTAAAAACGCCGGAAAAATTATGGTTCTTGAGGGCGGGCTGAAATATC 2981 |||| | || || || |||||||| || || ||||| |||| ||| |||| || | Sbjct 1313 CCTTCATGGGCTCCAAGAACGCCGGCAAGATCATGGTGGCCGAGGCTGGGTTGAAGTACC 1254 Query 2982 AGAACGTCACTATGAACCCGGAAGCAGCGCAGATGCTTGAGTCGCGGTCGTTCAGCATCG 3041 | |||| ||||| || ||||| |||| |||||||||||| ||||||||||||| | Sbjct 1253 AAGGGATCACGATGAATCCCGAAGCCTCGCAAATGCTTGAGTCGAGGTCGTTCAGCATTG 1194 Query 3042 AGGAAATCTGCAGATGGTTCCGCGTACCGCCATTTATGGTCGGCCACACATCGAAACAGA 3101 | || || ||| | |||||||| || ||||| || |||||||| |||| || ||| Sbjct 1193 AAGAGATGTGCCGGTGGTTCCGGGTGCCGCCCTTCATGGTCGGTCACATGGATAAGCAGT 1134 Query 3102 GCAGCTGGGCATCGAGTC--TTGAGGGTATGAACCTCCAGTTCCTGACGCACACCCTGCG 3159 ||| ||||| | || | || | |||||| || |||||||| ||| |||| Sbjct 1133 CCAGTTGGGC--CAGTTCGGTGGAAGCGCAGAACCTGCACTTCCTGACCAACAGTTTGCG 1076 Query 3160 CCCCCTGCTGGTGAACATAGAGCAGGAAATAGGACGGTGCCTGCT-GGACAG-----CGA 3213 ||| |||||||||||||| |||||||| || || |||||| | || || || Sbjct 1075 CCCGCTGCTGGTGAACATTGAGCAGGAGATCACCCGATGCCTGATCGGTGAGGCTGACGC 1016 Query 3214 TGATGAGGTTTTCGCGGAGTTCTCTGTAGAAGGACTGCTGCGCGCCGACAGCGCGGGCCG 3273 ||| ||| | ||||| |||||| |||| ||||| |||||||||||||||||||| || || Sbjct 1015 TGACGAGTTCTTCGCTGAGTTCGCTGTTGAAGGCCTGCTGCGCGCCGACAGCGCCGGTCG 956 Query 3274 TGCTGCGTACTATACCAGTGCGCTCCAGAATGGGTGGATGTCCCGCAATGACGTGCGCCG 3333 || || | || | || ||| || || || || ||||||| |||||| || ||||| || Sbjct 955 TGGCGCCTGGTACAACACTGCTCTGCAAAACGGCTGGATGTGCCGCAACGAGGTGCGGCG 896 Query 3334 TCTTGAGAATATGCCACCGATTGAAGGGGGTGACATTTACACCGTTCAG 3382 ||| || || ||| | || || || || || | | ||| |||||| Sbjct 895 TCTGGAAAACATGGCTCCAATCCCTGGCGGCGATACGTTCACTGTTCAG 847 Score = 156 bits (172), Expect = 1e-33 Identities = 188/256 (73%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 3692 GGGTGAAGGCGTAACAGCCAAACGTATCGCCGGTGCGCTTCGGGCGATGAATGGCGCCGA 3751 |||||| |||||||| || || || ||| || ||||||||| | || || | || Sbjct 443 GGGTGAGGGCGTAACTGCAAAGCGGATCAGCGCTGCGCTTCGATCTATCGGTGACAGTGA 384 Query 3752 CGTCACGGTCAATATTAACTCCCCTGGCGGGGACATGTTCGAAGGCCTGGCCATCTACAA 3811 || || || || || ||| ||| ||||| ||| |||| ||||| |||||||||||||| Sbjct 383 TGTGACCGTGAAGATCAACAGCCCAGGCGGCGACGTGTTTGAAGGGCTGGCCATCTACAA 324 Query 3812 CCTTCTGCGTGAATACGAAGGCCGTGTGACTGTGAAGGTGCTCGGTATTGCCGCCAGCGC 3871 ||| ||||| || || | ||| ||||| ||| | | ||||| | |||||| || Sbjct 323 CCTGCTGCGCGAGCACAAGGGCAAAGTGACGGTGCAAATCCTCGGCCTCGCCGCCTCGGC 264 Query 3872 CGCCTCGGTCATTGCGATGGCCGGGGATGAAATTCAGATCGGCCGTGGTGCCTTCCTGAT 3931 ||| ||| |||| || ||||| | |||||||| ||||||| || | | ||| ||||| Sbjct 263 CGCGTCGTTCATCGCTATGGCGGCTGATGAAATCCAGATCGCGCGCGCCGGCTTTCTGAT 204 Query 3932 GATCCACAACTGCTGG 3947 ||| |||||| ||||| Sbjct 203 GATTCACAACAGCTGG 188 >seq14071 Length=4236 Score = 140 bits (154), Expect = 8e-29 Identities = 256/369 (69%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 3671 TGTGATCGGGCAGGACTACTGGGGTGAAGGCGTAACAGCCAAACGTATCGCCGGTGCGCT 3730 ||||||||| |||||| | || || ||||| || ||| ||||||| | ||||| Sbjct 3267 TGTGATCGGTGAGGACTGGTACGGGGAGGGCGTGACCCTCAAGCGTATCGATGCAGCGCT 3326 Query 3731 TCGGGCGATGAATGGCGCC---GACGTCACGGTCAATATTAACTCCCCTGGCGGGGACAT 3787 ||||| || ||||| | || || | ||| | || ||||| || ||||| ||||| Sbjct 3327 GCGGGCCAT---TGGCGACCGTGAGGTGATGGTGTACATCAACTCGCCAGGCGGTGACAT 3383 Query 3788 GTTCGAAGGCCTGGCCATCTACAACCTTCTGCGTGAATACGAAGGCCG--TGTGACTGTG 3845 |||||||||| | ||||||||||||| |||| || || || | | || || Sbjct 3384 GTTCGAAGGCATTGCCATCTACAACCGCCTGCTCGAGCAC--AGCCAGAAGGTCACCACC 3441 Query 3846 AAGGTGCTCGGTATTGCCGCCAGCGCCGCCTCGGTCATTGCGATGGCCGGGGATGAAATT 3905 |||||||| ||||| || ||||||||||| ||| |||| |||| || | || Sbjct 3442 AAGGTGCTGGGTATGGCAGCCAGCGCCGCGTCGATCATCTACCTGGCTGGCGCCGAGCGC 3501 Query 3906 CAGATCGGCCGTGGTGCCTTCCTGATGATCCACAACTGCTGGGTCTACGCGATGGGTAAC 3965 ||| ||| | | | ||||||||||||||||||||||||||| || | || ||| Sbjct 3502 CAGGTCGCCAGCAGCGCCTTCCTGATGATCCACAACTGCTGGACCTTCCTCGCCGGCAAC 3561 Query 3966 CGCCATGACTTTGCG-GAACTGGCACAGTCTCTTGAGCCGTTCGATACCGCTATGGCAGA 4024 ||||| || ||||| || |||| | | ||| |||||| |||| ||| || Sbjct 3562 CGCCACTAC-TTGCGCGACGTGGCCGACGACATGGAGGAGTTCGACGCCGCCATGAGCGA 3620 Query 4025 CATCTACGC 4033 | ||||||| Sbjct 3621 CCTCTACGC 3629 >seq19217 Length=4307 Score = 109 bits (120), Expect = 1e-19 Identities = 333/507 (66%), Gaps = 16/507 (3%) Strand=Plus/Minus Query 12356 GATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGAA 12415 || ||| |||| || | ||||| || ||| || ||||||| | || || || || Sbjct 3889 GACCCGGCACTTGACCAGTGCAAGGGCTGCCTGTCGTCCTGCAAGTTGCGCTTTGGCGAG 3830 Query 12416 AACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-TA 12471 | |||||||||||| || ||||| ||||| | || ||||| | |||| ||| | Sbjct 3829 AGCAACGAACTCTCTTTCGGTGGATTCCCTGCCGTTTCTCTGATTGCCCGGAGCTGACCA 3770 Query 12472 TGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGT 12531 |||| || | | ||||| || || || ||| || || || || || || |||| Sbjct 3769 TGCGCAAGCACATCATCGCGGCCATCCAGGTGCACGCGGCCGCCGAGTACCCGAAAGAGT 3710 Query 12532 GTTGCGGCGTGGTGGCGCAAAAGAGCCGGGTAG---AGAAATATTTTCCATGTAGTAACC 12588 | |||||| || | || || | | || || |||| || || || || | ||| Sbjct 3709 GCTGCGGCCTGTT---GCTAACCATCGGGCGAGCCCAGAAGTACTTCCCTTGCGGGAACA 3653 Query 12589 TCGCTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGG 12648 |||| | ||| ||| ||| | || | || || || |||||||| ||||| || | Sbjct 3652 TCGCCATGGAGGCGAACGAAGAGTTCCGACTTGATCCCGAGGACTATGCCGCTGCGGAAG 3593 Query 12649 ACTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCA-GCCG--A 12705 || |||| ||||||| |||||||||| ||||| ||||| || | ||| |||| | Sbjct 3592 ACCTGGGTGAAGTGATCGGCATCGTTCACTCGCACCCGGACGCTACCA-GCAGGCCGTCA 3534 Query 12706 GCGAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGC 12765 || || || || ||||| || ||| | |||||||| ||| | ||||| Sbjct 3533 CCGCAC--GACCTGGCCATGTGCGAGGCCACGGCGCTGCCCTGGCACATTCTCTCCTGGC 3476 Query 12766 CGGAGGGGGATTTACGCACCATCCAGCCGCGCGGAGAACTGCCACTGCTGGAGCGTCCGT 12825 | || || || | | || ||| |||| || | |||| ||||| |||| |||| Sbjct 3475 CCGAAGGAGACCTCAGGACGATCACGCCGTCTGGCGCCGTGCCGCTGCTCAAGCGCCCGT 3416 Query 12826 TTGTGCTTGGACACTTCGACTGCTGGG 12852 |||| | |||| | ||||| |||| Sbjct 3415 TTGTTCATGGAGTTTGGGACTGTTGGG 3389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120138567450642