Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq19217 113 1e-20 seq14219 95.1 3e-15 >seq19217 Length=4307 Score = 113 bits (124), Expect = 1e-20 Identities = 334/507 (66%), Gaps = 16/507 (3%) Strand=Plus/Minus Query 12687 GATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGAA 12746 || ||| | || || | ||||| ||| ||| || ||||||| | || || ||||| Sbjct 3889 GACCCGGCACTTGACCAGTGCAAGGGCTGCCTGTCGTCCTGCAAGTTGCGCTTTGGCGAG 3830 Query 12747 AATAACGAACTCTCGTTTGGTGGCTTCCCTGGTACGTCGCTGAT---CAGGAGTTGA-TA 12802 | ||||||||||| || ||||| ||||||| || ||||| | |||| ||| | Sbjct 3829 AGCAACGAACTCTCTTTCGGTGGATTCCCTGCCGTTTCTCTGATTGCCCGGAGCTGACCA 3770 Query 12803 TGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGT 12862 |||| || | | ||||| || || || ||| || || || || || || |||| Sbjct 3769 TGCGCAAGCACATCATCGCGGCCATCCAGGTGCACGCGGCCGCCGAGTACCCGAAAGAGT 3710 Query 12863 GTTGTGGCGTGGTGGCGCAAAAGAGCCGGGTAG---AGAAATATTTTCCATGTAGTAACC 12919 | || ||| || | || || | | || || |||| || || || || | ||| Sbjct 3709 GCTGCGGCCTGTT---GCTAACCATCGGGCGAGCCCAGAAGTACTTCCCTTGCGGGAACA 3653 Query 12920 TCGCTACCGAGCCGACAGAACATTTTCACCTGTCTCCAGAAGACTATGCAGCTGCTGAGG 12979 |||| | ||| ||| ||| | || | || ||| || |||||||| ||||| || | Sbjct 3652 TCGCCATGGAGGCGAACGAAGAGTTCCGACTTGATCCCGAGGACTATGCCGCTGCGGAAG 3593 Query 12980 ACTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCA-GCCG--A 13036 || |||| ||||||| |||||||||| ||||| ||||| || | ||| |||| | Sbjct 3592 ACCTGGGTGAAGTGATCGGCATCGTTCACTCGCACCCGGACGCTACCA-GCAGGCCGTCA 3534 Query 13037 GCGAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGC 13096 || || || || ||||| || ||| | |||||||| ||| | ||||| Sbjct 3533 CCGCAC--GACCTGGCCATGTGCGAGGCCACGGCGCTGCCCTGGCACATTCTCTCCTGGC 3476 Query 13097 CGGAGGGGGATTTACGCACCATCCAGCCGCGCGGAGAACTGCCACTGCTGGAGCGTCCGT 13156 | || || || | | || ||| |||| || | |||| ||||| |||| |||| Sbjct 3475 CCGAAGGAGACCTCAGGACGATCACGCCGTCTGGCGCCGTGCCGCTGCTCAAGCGCCCGT 3416 Query 13157 TTGTGCTTGGACACTTCGACTGCTGGG 13183 |||| | |||| | ||||| |||| Sbjct 3415 TTGTTCATGGAGTTTGGGACTGTTGGG 3389 >seq14219 Length=2704 Score = 95.1 bits (104), Expect = 3e-15 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 15412 TTGATAAATGGACGCTTTATCAGGTTGCTCAGTATTGTGATCAGATGGTGCCAGACGGCA 15471 ||||| ||| |||| |||| | | || ||||| || || ||||||||||| ||||| | Sbjct 1673 TTGATCGCTGGTCGCTCTATCGGATCGCGCAGTACTGCGACCAGATGGTGCCGGACGG-A 1615 Query 15472 AAGGGGGCAACGGTACAGAACCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACG 15531 |||||| || | || ||||| | |||||||||| ||||| | ||| | | | Sbjct 1614 AAGGGG-----GGCATGGAGCCACGCTTTACCTGCAACTTGTACTTCCAGAAGCAAGCTG 1560 Query 15532 ACGCCTACACAGTCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCG 15591 | || || |||| || | || | ||| | ||||||| ||| || ||||||||| || Sbjct 1559 AAGCTTATGCAGTGCTCCAGGACCTGGCCTCGATCTTCCACGGCCTGGCCTACTGGGACG 1500 Query 15592 GGGATCAGATTGTGGCCCTGGCTGACATGCCGCGCGA 15628 | ||||| |||| | || || |||||| |||| Sbjct 1499 GAAGCCAGATCGTGGTCAACGCCGATATGCCGGGCGA 1463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132719577269940