Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq6273 118 4e-22 seq6500 107 8e-19 seq28354 93.3 2e-14 >seq6273 Length=5978 Score = 118 bits (130), Expect = 4e-22 Identities = 310/463 (67%), Gaps = 20/463 (4%) Strand=Plus/Plus Query 24428 CGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTGG 24487 || ||| | |||||||||||||| ||||| ||||| ||||| | |||||||||| | Sbjct 2841 CGGAACCTGATCCTGAAGGCCCGGCAGCTTGGCTTCACCACTGAGTGCTGCATCATCCAG 2900 Query 24488 CTCGACCACGCGCTGTTCAACGCGAACAGCCGGTGCGGCATCATCGCCCAGAACC-GCGA 24546 |||||| ||| |||||| | || || ||||| | ||||| || | || | Sbjct 2901 CTCGACGCCGCTCTGTTCGAGTCGGCCA---AGTGCGCACTGATCGCTCACACCCTGAAC 2957 Query 24547 GACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAGGC 24606 ||| ||| || | | || ||||| || ||||||| ||| |||||||||||||| | | Sbjct 2958 GAC-GCCAAGCGGCTGTTCCGGGAGAAAGTGAAGTACGCGTACGACAACCTGCCGAAAGA 3016 Query 24607 GCTGCGCGACGCGATGCCGCTCG-CCAACTGCACGCAGTC--CGAGATGCTGTTCGGGCA 24663 | | |||| ||||| || | || |||| |||| | | ||| || | ||| | Sbjct 3017 GATCCGCGCCGCGA-ACCCCGCGAGCAAC--GACGCCGCCGGTGAGTTGGTATTCAG--- 3070 Query 24664 CAACAACAGCAGCATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCGCCTGCA 24723 ||| | || || |||| || ||| | || || ||||| | | |||||| Sbjct 3071 CAAGGGCGGCTCACTCTACGTCAGTACCTCGTTTCGGGGTGGCACTCTGCGATACCTGCA 3130 Query 24724 CGTGTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGATCGTGAC 24783 ||| |||||||||||||||||||| ||| || || | ||||| |||||| || || Sbjct 3131 CGTTTCCGAGTTCGGGAAGATCTGCGCCAAGTTCCCACACAAGGCGCGGGAGATTGTCAC 3190 Query 24784 CGGCTCGATCCCGGCCGTGCCGAAGTCGGGCATTCTGGT---CATCGAGTCGACGGCCGA 24840 || | | ||| ||| | | | | | | | || ||| ||||||||||| || Sbjct 3191 GGGTGCCTTTGAGGCTGTGGCCA---CTGACTGTTTCGTCACCATTGAGTCGACGGCAGA 3247 Query 24841 GGGCCGCGAGGGCGAGTTCTACGAGATCACGATGCGCGCCGAG 24883 ||||| | ||| | |||| |||| | || | |||| ||| Sbjct 3248 AGGCCGGGCCGGCTACTTCTTCGAGTACTCGCAGAGCGCAGAG 3290 >seq6500 Length=2387 Score = 107 bits (118), Expect = 8e-19 Identities = 299/447 (67%), Gaps = 24/447 (5%) Strand=Plus/Plus Query 24427 CCGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTG 24486 ||||||| ||||||||||||| || ||||||||||| || || | |||||||||| Sbjct 1948 CCGCAACATCATCCTGAAGGCTCGGCAGCTCGGCTTCACTACTGAGTGCTGCATCATCCA 2007 Query 24487 GCTCGACCACGCGCTGTTCAA---CGCGAACAGCCGGTGCGGCATCATCGCCCAGAACC- 24542 ||||||| ||| || ||| | ||||| ||||| | ||||| || | || Sbjct 2008 GCTCGACGCCGCTCTATTCGAGTCGGCGAA------GTGCGCGCTGATCGCTCACACCCT 2061 Query 24543 GCGAGACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCG 24602 | ||| ||| || | || ||||| ||||| || | ||||||||||||||||| Sbjct 2062 GAACGAC-GCCAAGCGCCTGTTCCGGGAGAAGGTCAAATATGCCTACGACAACCTGCCTA 2120 Query 24603 AGGCGCTGCGCGACG-CGATGCCGCTCGCCAAC--TGCACGCAGTCCGAGATGCTGTTCG 24659 | | | | |||| || | || | ||| | ||| ||| || | ||| | ||||| Sbjct 2121 AAGAGATACGCGCCGCCAATCCTGCT-TCTAACGATGC-TGCTG-GTGAGCTTGTGTTCA 2177 Query 24660 GGCACAACAACAGCAGCATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCG-- 24717 | ||| | | || ||| | ||||| | || ||||| || || || | Sbjct 2178 G---CAAAGGCGGATCGCTCTACGTGTCCACGTCCTTCCGGGGCGGGAC--TCTACGGTA 2232 Query 24718 CCTGCACGTGTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGAT 24777 |||||||| |||||||||||||||||||| ||| || || | ||||||| ||||| Sbjct 2233 TCTGCACGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCCCACAAGGCCAGAGAGAT 2292 Query 24778 CGTGACCGGCTCGATCCCGGCCGTGCCGAAGTCGGGCATTCTGGTCATCGAGTCGACGGC 24837 ||| |||||| | || ||| || | | || || | || || |||||||| Sbjct 2293 CGTCACCGGCGCCTTCGAGGCTGTCGCCACCGATTGCTTTGTCACGATTGAATCGACGGC 2352 Query 24838 CGAGGGCCGCGAGGGCGAGTTCTACGA 24864 ||||| || | |||| | |||| ||| Sbjct 2353 GGAGGGGCGGGCGGGCTATTTCTTCGA 2379 >seq28354 Length=5615 Score = 93.3 bits (102), Expect = 2e-14 Identities = 78/93 (84%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 7809 ATGGAGGCGTGGCAGAGTGGTTTAATGTACTGGATTTGAAATCCAGCGACGGTA-AC-CC 7866 ||||| ||||||||||| ||||||||| || || |||||| || ||| ||| || || Sbjct 826 ATGGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTTCACGCC 767 Query 7867 GTCCGTGAGTTCGAATCTCACCGCCTCCGCCAG 7899 ||||||||||||||||||||||| |||||||| Sbjct 766 CTCCGTGAGTTCGAATCTCACCGCTTCCGCCAG 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201246242368209