Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_019917.1
Length=62952
Score E
Sequences producing significant alignments: (Bits) Value
seq6273 118 4e-22
seq6500 107 8e-19
seq28354 93.3 2e-14
>seq6273
Length=5978
Score = 118 bits (130), Expect = 4e-22
Identities = 310/463 (67%), Gaps = 20/463 (4%)
Strand=Plus/Plus
Query 24428 CGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTGG 24487
|| ||| | |||||||||||||| ||||| ||||| ||||| | |||||||||| |
Sbjct 2841 CGGAACCTGATCCTGAAGGCCCGGCAGCTTGGCTTCACCACTGAGTGCTGCATCATCCAG 2900
Query 24488 CTCGACCACGCGCTGTTCAACGCGAACAGCCGGTGCGGCATCATCGCCCAGAACC-GCGA 24546
|||||| ||| |||||| | || || ||||| | ||||| || | || |
Sbjct 2901 CTCGACGCCGCTCTGTTCGAGTCGGCCA---AGTGCGCACTGATCGCTCACACCCTGAAC 2957
Query 24547 GACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAGGC 24606
||| ||| || | | || ||||| || ||||||| ||| |||||||||||||| | |
Sbjct 2958 GAC-GCCAAGCGGCTGTTCCGGGAGAAAGTGAAGTACGCGTACGACAACCTGCCGAAAGA 3016
Query 24607 GCTGCGCGACGCGATGCCGCTCG-CCAACTGCACGCAGTC--CGAGATGCTGTTCGGGCA 24663
| | |||| ||||| || | || |||| |||| | | ||| || | ||| |
Sbjct 3017 GATCCGCGCCGCGA-ACCCCGCGAGCAAC--GACGCCGCCGGTGAGTTGGTATTCAG--- 3070
Query 24664 CAACAACAGCAGCATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCGCCTGCA 24723
||| | || || |||| || ||| | || || ||||| | | ||||||
Sbjct 3071 CAAGGGCGGCTCACTCTACGTCAGTACCTCGTTTCGGGGTGGCACTCTGCGATACCTGCA 3130
Query 24724 CGTGTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGATCGTGAC 24783
||| |||||||||||||||||||| ||| || || | ||||| |||||| || ||
Sbjct 3131 CGTTTCCGAGTTCGGGAAGATCTGCGCCAAGTTCCCACACAAGGCGCGGGAGATTGTCAC 3190
Query 24784 CGGCTCGATCCCGGCCGTGCCGAAGTCGGGCATTCTGGT---CATCGAGTCGACGGCCGA 24840
|| | | ||| ||| | | | | | | | || ||| ||||||||||| ||
Sbjct 3191 GGGTGCCTTTGAGGCTGTGGCCA---CTGACTGTTTCGTCACCATTGAGTCGACGGCAGA 3247
Query 24841 GGGCCGCGAGGGCGAGTTCTACGAGATCACGATGCGCGCCGAG 24883
||||| | ||| | |||| |||| | || | |||| |||
Sbjct 3248 AGGCCGGGCCGGCTACTTCTTCGAGTACTCGCAGAGCGCAGAG 3290
>seq6500
Length=2387
Score = 107 bits (118), Expect = 8e-19
Identities = 299/447 (67%), Gaps = 24/447 (5%)
Strand=Plus/Plus
Query 24427 CCGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTG 24486
||||||| ||||||||||||| || ||||||||||| || || | ||||||||||
Sbjct 1948 CCGCAACATCATCCTGAAGGCTCGGCAGCTCGGCTTCACTACTGAGTGCTGCATCATCCA 2007
Query 24487 GCTCGACCACGCGCTGTTCAA---CGCGAACAGCCGGTGCGGCATCATCGCCCAGAACC- 24542
||||||| ||| || ||| | ||||| ||||| | ||||| || | ||
Sbjct 2008 GCTCGACGCCGCTCTATTCGAGTCGGCGAA------GTGCGCGCTGATCGCTCACACCCT 2061
Query 24543 GCGAGACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCG 24602
| ||| ||| || | || ||||| ||||| || | |||||||||||||||||
Sbjct 2062 GAACGAC-GCCAAGCGCCTGTTCCGGGAGAAGGTCAAATATGCCTACGACAACCTGCCTA 2120
Query 24603 AGGCGCTGCGCGACG-CGATGCCGCTCGCCAAC--TGCACGCAGTCCGAGATGCTGTTCG 24659
| | | | |||| || | || | ||| | ||| ||| || | ||| | |||||
Sbjct 2121 AAGAGATACGCGCCGCCAATCCTGCT-TCTAACGATGC-TGCTG-GTGAGCTTGTGTTCA 2177
Query 24660 GGCACAACAACAGCAGCATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCG-- 24717
| ||| | | || ||| | ||||| | || ||||| || || || |
Sbjct 2178 G---CAAAGGCGGATCGCTCTACGTGTCCACGTCCTTCCGGGGCGGGAC--TCTACGGTA 2232
Query 24718 CCTGCACGTGTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGAT 24777
|||||||| |||||||||||||||||||| ||| || || | ||||||| |||||
Sbjct 2233 TCTGCACGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCCCACAAGGCCAGAGAGAT 2292
Query 24778 CGTGACCGGCTCGATCCCGGCCGTGCCGAAGTCGGGCATTCTGGTCATCGAGTCGACGGC 24837
||| |||||| | || ||| || | | || || | || || ||||||||
Sbjct 2293 CGTCACCGGCGCCTTCGAGGCTGTCGCCACCGATTGCTTTGTCACGATTGAATCGACGGC 2352
Query 24838 CGAGGGCCGCGAGGGCGAGTTCTACGA 24864
||||| || | |||| | |||| |||
Sbjct 2353 GGAGGGGCGGGCGGGCTATTTCTTCGA 2379
>seq28354
Length=5615
Score = 93.3 bits (102), Expect = 2e-14
Identities = 78/93 (84%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 7809 ATGGAGGCGTGGCAGAGTGGTTTAATGTACTGGATTTGAAATCCAGCGACGGTA-AC-CC 7866
||||| ||||||||||| ||||||||| || || |||||| || ||| ||| || ||
Sbjct 826 ATGGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTTCACGCC 767
Query 7867 GTCCGTGAGTTCGAATCTCACCGCCTCCGCCAG 7899
||||||||||||||||||||||| ||||||||
Sbjct 766 CTCCGTGAGTTCGAATCTCACCGCTTCCGCCAG 734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 201246242368209
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |