Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_019927.1
Length=47611
Score E
Sequences producing significant alignments: (Bits) Value
seq9203 325 1e-84
seq5804 205 3e-48
seq2733 116 1e-21
>seq9203
Length=13179
Score = 325 bits (360), Expect = 1e-84
Identities = 662/972 (68%), Gaps = 16/972 (2%)
Strand=Plus/Minus
Query 6026 ATATATCGAGGGCGCTGCTTAACCTCAGTGTAAATTCTTCCAATATATTCCCCCAGGACA 6085
||||| || || | || || ||||||||||| || | || |||||||| ||||| |||
Sbjct 11516 ATATACCGCGGTCTTTGTTTTACCTCAGTGTATATGCGCCCGATATATTCACCCAGCACA 11457
Query 6086 CCTATCCCTATAAGCTGGACGCCGCCAAGGAAAAGGATAGAAACCAGAAGGGATGGATAT 6145
|| || ||||| | || | ||| ||||| || || || || || || || ||||||||
Sbjct 11456 CCAATACCTATCAATTGAATGCCACCAAGAAACAGAATGGAGACGAGTAGCGATGGATAA 11397
Query 6146 CCGCGAACCGGGTTGCCAAAGGCAAGCGTGTCGACAATCATCCACGCT-CCATAGAGAAA 6204
|| | || | || || || || | || | | ||| | ||| ||||| | |||
Sbjct 11396 CCAGGCACAGCATTACCCCAGATAACTTTATCAATTACCATGAA-GCTACCATACAAAAA 11338
Query 6205 TGA-CAGCCCGGCCACTAACAACCCAATGTACGTCCACATTCTCAGAGGAAAGGTCGAGA 6263
||| ||| | |||| |||||||| | || ||||| | ||| ||||| | | || |
Sbjct 11337 TGAGCAGGTAG-CCACAAACAACCCTAAATATGTCCATACTCTTAGAGGTACAGATGAAA 11279
Query 6264 AGCTGGTAATACCCTCAAGCGCGAGATTCCAGAGTTTCCACCCGTTAAATTTGGTGCTTC 6323
||||||| || || |||| ||| |||||||| | |||||| || ||||| || | |
Sbjct 11278 AGCTGGTTATTCCTTCAATCGCCAGATTCCATAATTTCCAGCCATTAAACTTTGAATCCC 11219
Query 6324 CTGCCACGCGTTCAGCGCGCGAATACTCAACTACGTCAGTGCGTCCGCCGACCCATGACA 6383
| || | ||| || | || || ||||| | ||| | ||||| |||||||||
Sbjct 11218 CAGCAGACCTTTCTGCTCTAGAGTATTCAACCAGTTCAATATTTCCGCTTGCCCATGACA 11159
Query 6384 GGACTCCTTTCATGAACAGGTTCCGCTCAGGCATTAGCTTGATGTTTTCTACTACCTCAC 6443
| |||||||| |||| || |||||||||| ||||| | ||||| ||| |||| |
Sbjct 11158 ATATCCCTTTCATAAACAAATTGCGCTCAGGCAGCAGCTTAACATTTTCGACTGCCTCTC 11099
Query 6444 GAGACATCAGGCGAAAATCACCCACGTTTTCCTCGATTTGTGGGTTGCTTATTTTGTTGT 6503
||||| || || |||||||| || || || || ||| || | || ||||| ||||
Sbjct 11098 TTGACATTAGTCGGAAATCACCTACATTCTCTTCAATTCTCGGCGTACTGATTTTATTGT 11039
Query 6504 G-CAGCTTATAGAACATTTCAGCGCTTTTGCGCTTCAGGTGACCG----TCAGTGGAGCG 6558
| || || ||| ||| || || |||| | |||| ||| || | |||||
Sbjct 11038 GGCATCT-ATAAAACCACTCGGCTGTTTTCCTTTTCA----ACCAGTTTTCTTTAGAGCG 10984
Query 6559 GTCTGTGCGTTTAGCCAGTACCATATCTGCGCCAGTCTGCCAGCGCTGTATCAACTGCGG 6618
|| || || || || | || | ||| || || |||||| || | || ||
Sbjct 10983 ATCAGTACGCTTGGCTAACACTACATCAGCCCCTAACTGCCATTTTCTAATAAGCTCTGG 10924
Query 6619 GATAACATCAATTGGGTCCTGCAGGTCGACGTCGATTGGAATCACCGCCTCGCCGGTGGC 6678
|| || ||||| || ||||| || || || || |||||||| || || || || || ||
Sbjct 10923 AATTACTTCAATGGGATCCTGAAGATCTACATCAATTGGAATTACAGCATCTCCAGTCGC 10864
Query 6679 ATGGTCAAGGCCTGCAAATAACGCTGGCTCCTTTCCGAAATTGCGTGTGAAGGATAGGGG 6738
|| || | || ||||||| ||||||||| || |||||||| || |||||| ||| |
Sbjct 10863 ATATTCTATACCAGCAAATAGCGCTGGCTCTTTACCGAAATTTCGGGTGAAGCTTAGCGC 10804
Query 6739 CACAACAAGCGGATCTGACACGGCCAGCGCATTGATAATCGACTCTGTAGCGTCTTTGCT 6798
|| || || ||||| || ||| |||||| ||||||| || || | ||
Sbjct 10803 CATCACTAGACAATCTGCAGTCGCATATTTATTAATAATCAACTCTGTTGCATCGTGACT 10744
Query 6799 GCCGTCATTGATAAATACGATTTCCACCTCAAACGATTTGAGCGGTTCATATTCTCTGAC 6858
|||||||| || || | ||||| || ||| || | | | || | ||| | ||
Sbjct 10743 ACCGTCATTTATGAAGATTATTTCTACTTCATACTCGCTCAACTCTTTGTTTTCACGAAC 10684
Query 6859 GGTTTTATAGAAAATAGGTATTGTGTCTTCTTCATTGAAGACAGGAACCACGAGTGAAAT 6918
|| ||||||||| |||||||||| |||||||||||||| ||||| || || | ||| ||
Sbjct 10683 GGCTTTATAGAAGATAGGTATTGCATCTTCTTCATTGAAAACAGGTACAACCAATGATAT 10624
Query 6919 CTTCATTTTGCTTCCCTGAAGACAATGTATTTCGAAT-AGATAAACCCGCACACCAGGCT 6977
|||||||| || | || ||||| ||| || | | | || ||| || | || |||
Sbjct 10623 TTTCATTTTTTATCTTTAAAAACAATCAGTTTTGAGTAAAAGAATCCCACA-ATCAAGCT 10565
Query 6978 GATTGCCGAGAA 6989
||||| || ||
Sbjct 10564 AATTGCAGAAAA 10553
>seq5804
Length=1936
Score = 205 bits (226), Expect = 3e-48
Identities = 273/376 (73%), Gaps = 5/376 (1%)
Strand=Plus/Minus
Query 29494 CCAAAAAAGGCAGGACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGAT 29553
|||| | ||| | ||||| || || ||||| || ||||| | | || ||||| || |
Sbjct 1122 CCAAGCAGGGCCGCACAGTCCTGGGGCAGGCCGAGCAGGTAGCGTTCCGCGCCGGTGGCT 1063
Query 29554 GGCAAAAGGCCCGAATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCA 29613
|||| |||||||| ||||| || |||||| ||| |||||||| ||||| |||||
Sbjct 1062 GGCAGAAGGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGTGGTGTGCCGGCCTTCA 1003
Query 29614 TCATCACGCTGGCTGCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCTGCGCACTGG 29673
||||||| |||||||||||||| ||| || ||| ||| |||||||| || ||||
Sbjct 1002 TCATCACCCTGGCTGCTGACTACTGCGCCCAGTGCAGCGACACCGACTTCTGTGCCCTGG 943
Query 29674 TAGAGCATGAGCTTTATCACATCGCCCAAGAAGTGGATGAGTTTGGCTCACCGAAGTTTT 29733
||||||||||||| || |||||||| || | |||| | | ||| || | | |||
Sbjct 942 TAGAGCATGAGCTGTACCACATCGCACACGCCACGGATAAATACGGC-CAGCCAGCCTTT 884
Query 29734 ACCGCGACTCAGGTA-AGCCGAAGCTTTGCATGCGCGGACATGATGTTGAGGAATTCGTT 29792
||| | ||| | ||||||||| ||||| || || ||||| ||||| |||||
Sbjct 883 ACC---AAGGAGGGAGCGCCGAAGCTGGAGATGCGTGGTCACGATGTCGAGGAGTTCGTC 827
Query 29793 GGCGTTGTCCGTCGATATGGCGCAAGCGCTGATGTCCAGGAATTAGTAGATGCGGCAAAT 29852
|| || || || || || || || ||| |||| || || | || || ||||| |||||
Sbjct 826 GGTGTGGTACGCCGCTACGGTGCGAGCCCTGACGTTCAAGCGTTGGTGGATGCAGCAAAC 767
Query 29853 AAACCAGCAGAGGTGG 29868
||||| || |||||||
Sbjct 766 AAACCCGCCGAGGTGG 751
>seq2733
Length=8656
Score = 116 bits (128), Expect = 1e-21
Identities = 185/263 (70%), Gaps = 2/263 (1%)
Strand=Plus/Minus
Query 42980 GCCGATTTGACCGTGGCGAGTACCAAAAACTACAACCTCAATTCAAACAATTTCGTTAAA 43039
|| ||| |||| || || ||||||||||| ||| | || || || | || |||||
Sbjct 2092 GCAGATATGACGGTTGCTTCAACCAAAAACTATAACTTAAACTCTAATCAGTTTATTAAA 2033
Query 43040 GGTGCTCGCGTTCAGGGAGAAGACTCGGCTCCCGTGGTAATTTTCCCTCTCGGCATTCCC 43099
|||| |||||| || ||||| | || || || | || || || ||||| ||
Sbjct 2032 GGTGAACGCGTTACAGGTGAAGATAAAGTACCTGTTATATTGTTTCCACTAGGCATACCA 1973
Query 43100 AATGTGAAGACTGCTATCGACAGAGCTATTGAGAAGAATCGTTGCTCAGTTGCGCTTTCT 43159
|| | || |||||||| || | || ||||| || |||| ||||| || |||||||||
Sbjct 1972 AACTTTAAAACTGCTATTGATCGTGCCATTGAAAAAAATCCATGCTCTGTAGCGCTTTCT 1913
Query 43160 GATGTCGTTGTGACTCAGTTCAACCACTC-TTTCCTGTTCGGCAAGTTTGGCTTCATTGT 43218
||||| ||| | ||||| || || || | |||| |||| | ||| |||| | | |||
Sbjct 1912 GATGTAGTTATTACTCAATTAAATCAGGCTTTTCTTGTTGGTCAA-ATTGGTTACCGTGT 1854
Query 43219 TGAAGGAACTGAGGTGATTGACC 43241
||||| || | ||||||||||
Sbjct 1853 AGAAGGCTCTCAAGTGATTGACC 1831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152178077837138
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |