Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq9203 325 1e-84 seq5804 205 3e-48 seq2733 116 1e-21 >seq9203 Length=13179 Score = 325 bits (360), Expect = 1e-84 Identities = 662/972 (68%), Gaps = 16/972 (2%) Strand=Plus/Minus Query 6026 ATATATCGAGGGCGCTGCTTAACCTCAGTGTAAATTCTTCCAATATATTCCCCCAGGACA 6085 ||||| || || | || || ||||||||||| || | || |||||||| ||||| ||| Sbjct 11516 ATATACCGCGGTCTTTGTTTTACCTCAGTGTATATGCGCCCGATATATTCACCCAGCACA 11457 Query 6086 CCTATCCCTATAAGCTGGACGCCGCCAAGGAAAAGGATAGAAACCAGAAGGGATGGATAT 6145 || || ||||| | || | ||| ||||| || || || || || || || |||||||| Sbjct 11456 CCAATACCTATCAATTGAATGCCACCAAGAAACAGAATGGAGACGAGTAGCGATGGATAA 11397 Query 6146 CCGCGAACCGGGTTGCCAAAGGCAAGCGTGTCGACAATCATCCACGCT-CCATAGAGAAA 6204 || | || | || || || || | || | | ||| | ||| ||||| | ||| Sbjct 11396 CCAGGCACAGCATTACCCCAGATAACTTTATCAATTACCATGAA-GCTACCATACAAAAA 11338 Query 6205 TGA-CAGCCCGGCCACTAACAACCCAATGTACGTCCACATTCTCAGAGGAAAGGTCGAGA 6263 ||| ||| | |||| |||||||| | || ||||| | ||| ||||| | | || | Sbjct 11337 TGAGCAGGTAG-CCACAAACAACCCTAAATATGTCCATACTCTTAGAGGTACAGATGAAA 11279 Query 6264 AGCTGGTAATACCCTCAAGCGCGAGATTCCAGAGTTTCCACCCGTTAAATTTGGTGCTTC 6323 ||||||| || || |||| ||| |||||||| | |||||| || ||||| || | | Sbjct 11278 AGCTGGTTATTCCTTCAATCGCCAGATTCCATAATTTCCAGCCATTAAACTTTGAATCCC 11219 Query 6324 CTGCCACGCGTTCAGCGCGCGAATACTCAACTACGTCAGTGCGTCCGCCGACCCATGACA 6383 | || | ||| || | || || ||||| | ||| | ||||| ||||||||| Sbjct 11218 CAGCAGACCTTTCTGCTCTAGAGTATTCAACCAGTTCAATATTTCCGCTTGCCCATGACA 11159 Query 6384 GGACTCCTTTCATGAACAGGTTCCGCTCAGGCATTAGCTTGATGTTTTCTACTACCTCAC 6443 | |||||||| |||| || |||||||||| ||||| | ||||| ||| |||| | Sbjct 11158 ATATCCCTTTCATAAACAAATTGCGCTCAGGCAGCAGCTTAACATTTTCGACTGCCTCTC 11099 Query 6444 GAGACATCAGGCGAAAATCACCCACGTTTTCCTCGATTTGTGGGTTGCTTATTTTGTTGT 6503 ||||| || || |||||||| || || || || ||| || | || ||||| |||| Sbjct 11098 TTGACATTAGTCGGAAATCACCTACATTCTCTTCAATTCTCGGCGTACTGATTTTATTGT 11039 Query 6504 G-CAGCTTATAGAACATTTCAGCGCTTTTGCGCTTCAGGTGACCG----TCAGTGGAGCG 6558 | || || ||| ||| || || |||| | |||| ||| || | ||||| Sbjct 11038 GGCATCT-ATAAAACCACTCGGCTGTTTTCCTTTTCA----ACCAGTTTTCTTTAGAGCG 10984 Query 6559 GTCTGTGCGTTTAGCCAGTACCATATCTGCGCCAGTCTGCCAGCGCTGTATCAACTGCGG 6618 || || || || || | || | ||| || || |||||| || | || || Sbjct 10983 ATCAGTACGCTTGGCTAACACTACATCAGCCCCTAACTGCCATTTTCTAATAAGCTCTGG 10924 Query 6619 GATAACATCAATTGGGTCCTGCAGGTCGACGTCGATTGGAATCACCGCCTCGCCGGTGGC 6678 || || ||||| || ||||| || || || || |||||||| || || || || || || Sbjct 10923 AATTACTTCAATGGGATCCTGAAGATCTACATCAATTGGAATTACAGCATCTCCAGTCGC 10864 Query 6679 ATGGTCAAGGCCTGCAAATAACGCTGGCTCCTTTCCGAAATTGCGTGTGAAGGATAGGGG 6738 || || | || ||||||| ||||||||| || |||||||| || |||||| ||| | Sbjct 10863 ATATTCTATACCAGCAAATAGCGCTGGCTCTTTACCGAAATTTCGGGTGAAGCTTAGCGC 10804 Query 6739 CACAACAAGCGGATCTGACACGGCCAGCGCATTGATAATCGACTCTGTAGCGTCTTTGCT 6798 || || || ||||| || ||| |||||| ||||||| || || | || Sbjct 10803 CATCACTAGACAATCTGCAGTCGCATATTTATTAATAATCAACTCTGTTGCATCGTGACT 10744 Query 6799 GCCGTCATTGATAAATACGATTTCCACCTCAAACGATTTGAGCGGTTCATATTCTCTGAC 6858 |||||||| || || | ||||| || ||| || | | | || | ||| | || Sbjct 10743 ACCGTCATTTATGAAGATTATTTCTACTTCATACTCGCTCAACTCTTTGTTTTCACGAAC 10684 Query 6859 GGTTTTATAGAAAATAGGTATTGTGTCTTCTTCATTGAAGACAGGAACCACGAGTGAAAT 6918 || ||||||||| |||||||||| |||||||||||||| ||||| || || | ||| || Sbjct 10683 GGCTTTATAGAAGATAGGTATTGCATCTTCTTCATTGAAAACAGGTACAACCAATGATAT 10624 Query 6919 CTTCATTTTGCTTCCCTGAAGACAATGTATTTCGAAT-AGATAAACCCGCACACCAGGCT 6977 |||||||| || | || ||||| ||| || | | | || ||| || | || ||| Sbjct 10623 TTTCATTTTTTATCTTTAAAAACAATCAGTTTTGAGTAAAAGAATCCCACA-ATCAAGCT 10565 Query 6978 GATTGCCGAGAA 6989 ||||| || || Sbjct 10564 AATTGCAGAAAA 10553 >seq5804 Length=1936 Score = 205 bits (226), Expect = 3e-48 Identities = 273/376 (73%), Gaps = 5/376 (1%) Strand=Plus/Minus Query 29494 CCAAAAAAGGCAGGACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGAT 29553 |||| | ||| | ||||| || || ||||| || ||||| | | || ||||| || | Sbjct 1122 CCAAGCAGGGCCGCACAGTCCTGGGGCAGGCCGAGCAGGTAGCGTTCCGCGCCGGTGGCT 1063 Query 29554 GGCAAAAGGCCCGAATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCA 29613 |||| |||||||| ||||| || |||||| ||| |||||||| ||||| ||||| Sbjct 1062 GGCAGAAGGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGTGGTGTGCCGGCCTTCA 1003 Query 29614 TCATCACGCTGGCTGCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCTGCGCACTGG 29673 ||||||| |||||||||||||| ||| || ||| ||| |||||||| || |||| Sbjct 1002 TCATCACCCTGGCTGCTGACTACTGCGCCCAGTGCAGCGACACCGACTTCTGTGCCCTGG 943 Query 29674 TAGAGCATGAGCTTTATCACATCGCCCAAGAAGTGGATGAGTTTGGCTCACCGAAGTTTT 29733 ||||||||||||| || |||||||| || | |||| | | ||| || | | ||| Sbjct 942 TAGAGCATGAGCTGTACCACATCGCACACGCCACGGATAAATACGGC-CAGCCAGCCTTT 884 Query 29734 ACCGCGACTCAGGTA-AGCCGAAGCTTTGCATGCGCGGACATGATGTTGAGGAATTCGTT 29792 ||| | ||| | ||||||||| ||||| || || ||||| ||||| ||||| Sbjct 883 ACC---AAGGAGGGAGCGCCGAAGCTGGAGATGCGTGGTCACGATGTCGAGGAGTTCGTC 827 Query 29793 GGCGTTGTCCGTCGATATGGCGCAAGCGCTGATGTCCAGGAATTAGTAGATGCGGCAAAT 29852 || || || || || || || || ||| |||| || || | || || ||||| ||||| Sbjct 826 GGTGTGGTACGCCGCTACGGTGCGAGCCCTGACGTTCAAGCGTTGGTGGATGCAGCAAAC 767 Query 29853 AAACCAGCAGAGGTGG 29868 ||||| || ||||||| Sbjct 766 AAACCCGCCGAGGTGG 751 >seq2733 Length=8656 Score = 116 bits (128), Expect = 1e-21 Identities = 185/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 42980 GCCGATTTGACCGTGGCGAGTACCAAAAACTACAACCTCAATTCAAACAATTTCGTTAAA 43039 || ||| |||| || || ||||||||||| ||| | || || || | || ||||| Sbjct 2092 GCAGATATGACGGTTGCTTCAACCAAAAACTATAACTTAAACTCTAATCAGTTTATTAAA 2033 Query 43040 GGTGCTCGCGTTCAGGGAGAAGACTCGGCTCCCGTGGTAATTTTCCCTCTCGGCATTCCC 43099 |||| |||||| || ||||| | || || || | || || || ||||| || Sbjct 2032 GGTGAACGCGTTACAGGTGAAGATAAAGTACCTGTTATATTGTTTCCACTAGGCATACCA 1973 Query 43100 AATGTGAAGACTGCTATCGACAGAGCTATTGAGAAGAATCGTTGCTCAGTTGCGCTTTCT 43159 || | || |||||||| || | || ||||| || |||| ||||| || ||||||||| Sbjct 1972 AACTTTAAAACTGCTATTGATCGTGCCATTGAAAAAAATCCATGCTCTGTAGCGCTTTCT 1913 Query 43160 GATGTCGTTGTGACTCAGTTCAACCACTC-TTTCCTGTTCGGCAAGTTTGGCTTCATTGT 43218 ||||| ||| | ||||| || || || | |||| |||| | ||| |||| | | ||| Sbjct 1912 GATGTAGTTATTACTCAATTAAATCAGGCTTTTCTTGTTGGTCAA-ATTGGTTACCGTGT 1854 Query 43219 TGAAGGAACTGAGGTGATTGACC 43241 ||||| || | |||||||||| Sbjct 1853 AGAAGGCTCTCAAGTGATTGACC 1831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152178077837138