Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq15216 113 1e-20 seq14219 104 6e-18 >seq15216 Length=457 Score = 113 bits (124), Expect = 1e-20 Identities = 197/284 (69%), Gaps = 12/284 (4%) Strand=Plus/Plus Query 3691 CGCTGGCGTAGGAGAATTTGCCGTCAATAACGTTGGCGCGGGTGTAGACA-----TACGT 3745 |||||| ||||| ||| |||||||| || ||||| |||||||||||| || | || Sbjct 21 CGCTGGAGTAGGTGAACTTGCCGTCGATGACGTTCGCGCGGGTGTAGGCAAAGTCGAAGT 80 Query 3746 CA-TATCGCGCGGCATATCCGCCAGCGCGGCCAGCTGATTACCGGCCCAGTATGTCATGC 3804 || || ||||||||||||| |||| | | | ||| |||||| || ||||||| Sbjct 81 CAGTAGCGCGCGGCATATCAGCCAAGGTGAAGACCTGGCCCTGGGCCCAATAGGTCATGC 140 Query 3805 CGCGGAAGATGCTCGCCAGGTCGCGCAGCACCGTAAACGCCTCGTTCTGGCTCTGGATAT 3864 | || |||| || | ||| |||| || || | || || || |||||| | | Sbjct 141 CTCGATAGATTGCCGAGATGTCACGCAACAGCGACCAGGCATCAGCCTTGCTCTGCAGGT 200 Query 3865 ACACGTCGCAGAGAAAACGTGGCTCAGTACCGCTGCCGCCGGTACCGTCCGGCACGGGCT 3924 || || ||||| || || ||||| | | ||| || | |||||||| || | | Sbjct 201 TCAGGTTGCAGATGAAGCGCGGCTC----CTG--GCCACCCTTCCCGTCCGGTACCAGTT 254 Query 3925 GATCGCAGTGCTGCGCGATGCGGTAGAGTTCCCACTTGTCCACC 3968 | ||||| | ||| | || ||||| || ||||||||||||||| Sbjct 255 GGTCGCAATACTGGGAAATCCGGTAAAGCTCCCACTTGTCCACC 298 >seq14219 Length=2704 Score = 104 bits (114), Expect = 6e-18 Identities = 225/335 (67%), Gaps = 10/335 (3%) Strand=Plus/Plus Query 3750 TCGCGCGGCATATCCGCCAGCGCGGCCAGCTGATTACCGGCCCAGTATGTCATGCCGCGG 3809 |||| ||||||||| || | | | ||| | ||| ||||||| | || |||| || Sbjct 1463 TCGCCCGGCATATCGGCGTTGACCACGATCTGGCTTCCGTCCCAGTAGGCCAGGCCGTGG 1522 Query 3810 AAGATGCTCGCCAGGTCGCGCAGCACCGTAAACGCCTCGTTCTGGCTCTGGATATACACG 3869 ||||| |||||||| | ||||| | | | || || || |||||| |||| | Sbjct 1523 AAGATCGAGGCCAGGTCCTGGAGCACTGCATAAGCTTCAGCTTGCTTCTGGAAGTACAAG 1582 Query 3870 TCGCAGAGAAAACGTGGCTCAGTACCGCTGCCGCCGGTACCGTCCGGCACGGGCTGATCG 3929 | |||| ||| |||||||| | ||| || | ||||||||||| ||| ||| Sbjct 1583 TTGCAGGTAAAGCGTGGCTCCAT------GCCCCCCTTTCCGTCCGGCACCATCTGGTCG 1636 Query 3930 CAGTGCTGCGCGATGCGGTAGAGTTCCCACTTGTCCACCTGCGTCGCATCCAGCCGGTCT 3989 |||| ||||||||| || ||||| ||| || ||| || || || | ||||| Sbjct 1637 CAGTACTGCGCGATCCGATAGAGCGACCAGCGATCAACCATTGTTGCGTCGATGCGGTCG 1696 Query 3990 CCGATCCCGAA--ACGGTCACTTAGCACCAGGTCGTAAAACACCCATGCGGGATTATTGC 4047 |||| ||| | | || | ||||||| |||||| || | ||| || || || ||| Sbjct 1697 CCGAGGCCGTAGTATGGGTGC--AGCACCAAGTCGTAGAAGATCCAGGCCGGGTTGTTGG 1754 Query 4048 TCCAGGCCCATTTAAACGAGCCGTCCCAGGTGCCG 4082 | ||||| ||| || | ||| ||||| ||||| Sbjct 1755 TATAGGCCTCTTTGAATGTGCCATCCCAAATGCCG 1789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124671313678444