Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq8192 342 6e-89
seq16622 187 3e-42
seq25180 111 2e-19
>seq8192
Length=2942228
Score = 342 bits (378), Expect = 6e-89
Identities = 673/988 (68%), Gaps = 17/988 (2%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||| | ||| |||||| || || ||
Sbjct 678918 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAACTTGTTGGC 678977
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
||||| ||||| || | | ||||||| || ||| || | ||||| || || ||
Sbjct 678978 GAACAAGTGGTGCACGCGC---AACATCCAGTTCAAGTCACCCGCTCCGAAAACACACAC 679034
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||| || | ||| | |||| |||| |||||||| | || || || | | |||||||||
Sbjct 679035 GGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAATGTCACCTTC 679094
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| ||||||||||| || || ||||||||||| | ||||| || |
Sbjct 679095 AAAGTACTGCCACTTGACAAACCTGGCAATTGCGTGCATGTCGGACATATCGTACTTATG 679154
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| | || | | || || || |||| || | ||| | |||||||| || | ||
Sbjct 679155 GCTTAAGGACAGTGATCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 679214
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCA 160410
||| |||||||| ||||| || | ||| ||||| |||| | ||| | || || |
Sbjct 679215 GTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTATTTTTTCATTCTCG-A 679273
Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470
| || | || || || | || ||||| || || ||||| || || | |||
Sbjct 679274 GCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTG 679333
Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529
| | ||| || ||| ||| ||| || |||| | || | ||| ||||| |
Sbjct 679334 TTTCAAGAGGAGGA-TGTATTTTGTCGGTCCCCATGTTTGTCAACTTTCCATTCACGACT 679392
Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589
|| | |||| |||||||| | | || | | |||||| | ||||| ||||| |
Sbjct 679393 GCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCCGTTTCTAGGTTA 679452
Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649
|| | || | ||| || |||| | |||| || || ||||| || || | |||||
Sbjct 679453 TTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 679512
Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709
|| ||||||| | ||||||| ||||||||| | ||| ||| || |||||| |
Sbjct 679513 TCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTCGGTAGAGGTCCTGC 679572
Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769
||||| || | || ||||| || |||||||| || || ||||| || |||| || | |
Sbjct 679573 ATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAACACTCTCCAGCTGA 679632
Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA- 160825
|||||||||||||| ||| |||||| || | || || |||| | |||| |||| |
Sbjct 679633 CTGGCCACAAAGACATTACTGAAACAGGATGCAATGCCAATCACCGCGGCCAAAAAGGAT 679692
Query 160826 -CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884
| ||| || ||| |||||||| | |||||| | ||||||||| || ||||
Sbjct 679693 TCCTCTGAT-----TTTGTATCCACGTGAATGCAATAGAAATTCTGAGGCATATAAATGG 679747
Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944
| || || | ||| || | ||| || || || ||||| | ||| | ||| || ||||| |
Sbjct 679748 CTCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAGAATATGCTATTG 679807
Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004
||||||| | ||| || ||| || | | | || || ||| ||||||| |||
Sbjct 679808 GAAACTCTGCCTCTTCTTTACTAAGCGGTTCTTCAATATATTTGCGCTTCTTGATGAAAG 679867
Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032
|| ||||||| | |||||||| || ||
Sbjct 679868 AAGCACAATCACTGGTCATGTTTATGTA 679895
>seq16622
Length=1053215
Score = 187 bits (206), Expect = 3e-42
Identities = 228/311 (73%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212
||||| | ||| | | ||||||| ||||| || || || || || |||||||||||| ||
Sbjct 776535 AGAGTGAGGCAGGCTATTCCAGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTG 776594
Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272
| || |||||||| |||| |||||||||||| || || | |||||||| ||| |||
Sbjct 776595 TAACACCCTTCGTCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 776654
Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332
| ||| || ||||| | || ||||| | ||| || |||||||| || ||||||| |
Sbjct 776655 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTGG 776714
Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392
|| |||||| |||||| || ||||| ||||| || || ||||| || || |||| |
Sbjct 776715 CTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 776774
Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452
|| || | | ||||| || ||||| | ||||| || | |||||||| ||||
Sbjct 776775 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGCGTTCAGCAACTCTCTT 776834
Query 168453 TCATCTTGAGT 168463
||||||| ||
Sbjct 776835 ACATCTTGGGT 776845
>seq25180
Length=2147484
Score = 111 bits (122), Expect = 2e-19
Identities = 171/244 (70%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241
|||| | |||||| | ||| | | | |||||| |||||| | | ||||| |||
Sbjct 598680 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 598621
Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301
|||| |||| || |||| |||||| | ||||| || |||| | || |||||| || |
Sbjct 598620 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 598561
Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361
| ||||| |||| ||| || || || ||||| | || || | | || | || |
Sbjct 598560 TCTCATAGTTTTCTCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 598501
Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421
||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || |
Sbjct 598500 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 598441
Query 176422 TACA 176425
| ||
Sbjct 598440 TGCA 598437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576997598333880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |