Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq8192 342 6e-89 seq16622 187 3e-42 seq25180 111 2e-19 >seq8192 Length=2942228 Score = 342 bits (378), Expect = 6e-89 Identities = 673/988 (68%), Gaps = 17/988 (2%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| |||||| || || || Sbjct 678918 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAACTTGTTGGC 678977 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||||| ||||| || | | ||||||| || ||| || | ||||| || || || Sbjct 678978 GAACAAGTGGTGCACGCGC---AACATCCAGTTCAAGTCACCCGCTCCGAAAACACACAC 679034 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| | |||| |||| |||||||| | || || || | | ||||||||| Sbjct 679035 GGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAATGTCACCTTC 679094 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||||||||| || || ||||||||||| | ||||| || | Sbjct 679095 AAAGTACTGCCACTTGACAAACCTGGCAATTGCGTGCATGTCGGACATATCGTACTTATG 679154 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || |||| || | ||| | |||||||| || | || Sbjct 679155 GCTTAAGGACAGTGATCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 679214 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCA 160410 ||| |||||||| ||||| || | ||| ||||| |||| | ||| | || || | Sbjct 679215 GTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTATTTTTTCATTCTCG-A 679273 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | || | || || || | || ||||| || || ||||| || || | ||| Sbjct 679274 GCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTG 679333 Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| ||| ||| || |||| | || | ||| ||||| | Sbjct 679334 TTTCAAGAGGAGGA-TGTATTTTGTCGGTCCCCATGTTTGTCAACTTTCCATTCACGACT 679392 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 || | |||| |||||||| | | || | | |||||| | ||||| ||||| | Sbjct 679393 GCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCCGTTTCTAGGTTA 679452 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || | || | ||| || |||| | |||| || || ||||| || || | ||||| Sbjct 679453 TTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 679512 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | ||||||| ||||||||| | ||| ||| || |||||| | Sbjct 679513 TCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTCGGTAGAGGTCCTGC 679572 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | || ||||| || |||||||| || || ||||| || |||| || | | Sbjct 679573 ATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAACACTCTCCAGCTGA 679632 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA- 160825 |||||||||||||| ||| |||||| || | || || |||| | |||| |||| | Sbjct 679633 CTGGCCACAAAGACATTACTGAAACAGGATGCAATGCCAATCACCGCGGCCAAAAAGGAT 679692 Query 160826 -CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 | ||| || ||| |||||||| | |||||| | ||||||||| || |||| Sbjct 679693 TCCTCTGAT-----TTTGTATCCACGTGAATGCAATAGAAATTCTGAGGCATATAAATGG 679747 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 | || || | ||| || | ||| || || || ||||| | ||| | ||| || ||||| | Sbjct 679748 CTCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAGAATATGCTATTG 679807 Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004 ||||||| | ||| || ||| || | | | || || ||| ||||||| ||| Sbjct 679808 GAAACTCTGCCTCTTCTTTACTAAGCGGTTCTTCAATATATTTGCGCTTCTTGATGAAAG 679867 Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032 || ||||||| | |||||||| || || Sbjct 679868 AAGCACAATCACTGGTCATGTTTATGTA 679895 >seq16622 Length=1053215 Score = 187 bits (206), Expect = 3e-42 Identities = 228/311 (73%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | ||||||| ||||| || || || || || |||||||||||| || Sbjct 776535 AGAGTGAGGCAGGCTATTCCAGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTG 776594 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || |||||||| |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 776595 TAACACCCTTCGTCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 776654 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || ||||| | ||| || |||||||| || ||||||| | Sbjct 776655 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTGG 776714 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 || |||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 776715 CTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 776774 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | ||||| || ||||| | ||||| || | |||||||| |||| Sbjct 776775 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGCGTTCAGCAACTCTCTT 776834 Query 168453 TCATCTTGAGT 168463 ||||||| || Sbjct 776835 ACATCTTGGGT 776845 >seq25180 Length=2147484 Score = 111 bits (122), Expect = 2e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| |||||| | | ||||| ||| Sbjct 598680 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 598621 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 598620 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 598561 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| ||| || || || ||||| | || || | | || | || | Sbjct 598560 TCTCATAGTTTTCTCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 598501 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 598500 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 598441 Query 176422 TACA 176425 | || Sbjct 598440 TGCA 598437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576997598333880