Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq12372 140 8e-29 seq7504 129 1e-25 >seq12372 Length=38393 Score = 140 bits (154), Expect = 8e-29 Identities = 222/314 (71%), Gaps = 11/314 (4%) Strand=Plus/Minus Query 25782 CGACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGG--TTCTGCCACTTGCGCGT 25839 |||||| || ||||| ||||| | ||||| ||| | |||| ||||| ||| || Sbjct 38292 CGACAATGATTTCAGTGGTGTAACG--CTTGA---TGCCGTCCTTCTCCCACTCGCGGGT 38238 Query 25840 GCGCAACTTGCCTTCAATGTAAAGCTTTGAG--CCTTTGCGTGTGTACTCGCCGGCCACC 25897 ||| ||||||||| ||||| || ||| | |||||||| |||||||||||| | | Sbjct 38237 TTGCAGCTTGCCTTCGATGTA--GCATTGGGAACCTTTGCGCAGGTACTCGCCGGCGATC 38180 Query 25898 TCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCT 25957 || |||| ||| ||| | ||| || ||||||||||| || || ||| |||||| Sbjct 38179 TCGGCCACCTTGCCGAACAACGACACGCGGTGCCACTCGGTGCGCTCGACCTTCTGCCCG 38120 Query 25958 GTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCACGGCGGTACCG 26017 || |||||||| | ||||||| |||||||| | ||| | || | || ||| | ||| Sbjct 38119 GTTTGCTTGTCGGTCCACTGCTCGCTGGTGGCCAGGCTGAGGTTAGTTACCGCGTTGCCG 38060 Query 26018 TTAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTA 26077 || |||| || | ||||| |||||||| || | | || || | ||| || || || Sbjct 38059 TTTGGCAGGTAACGGACTTCGGGGTCCTGTCCGCAAGTCCCAACCAGGATCACTTTATTT 38000 Query 26078 ATTCCGCGTGCCAT 26091 | || || ||||| Sbjct 37999 ACGCCACGGGCCAT 37986 >seq7504 Length=9783 Score = 129 bits (142), Expect = 1e-25 Identities = 187/264 (71%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887 ||||| || || ||| ||||||||| ||||| || || |||||||| |||||| Sbjct 3064 CCACTCACGGGTCTGCAGCTTGCCTTCGATGTAGCACTGCGAACCTTTGCGCAGGTACTC 3005 Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947 |||||| | ||| || | ||| ||| | | | ||||||||||| || || || || Sbjct 3004 GCCGGCAATCTCAGCAACCTTGCCGAACAGCGACACACGGTGCCATTCGGTACGCTCGAC 2945 Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007 | ||| || | ||||||||| | | ||||| ||||| || | ||| | || | ||| Sbjct 2944 CTTCTGGCCCGACTGCTTGTCGGTCCATTGCTCGCTGGTTGCCAGGCTCAGGTTGGTCAC 2885 Query 26008 GGCGGTACCGTTAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGAT 26067 ||| ||||||| |||| || | ||||| || |||||||| || | ||||| | || Sbjct 2884 GGCATTACCGTTGGGCAGGTAGCGGACTTCGGGATCCTGGCCACAGGTACCGACCAGAAT 2825 Query 26068 TACCTTGTTAATTCCGCGTGCCAT 26091 || ||||||| || || ||||| Sbjct 2824 GACTTTGTTAACCCCACGGGCCAT 2801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123615698819464