Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq14566 147 6e-31 >seq14566 Length=1101 Score = 147 bits (162), Expect = 6e-31 Identities = 382/567 (67%), Gaps = 23/567 (4%) Strand=Plus/Plus Query 2387 CAGTCTCTTTACTCGCCTCATGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAGA 2446 ||| ||| || |||| || ||||| |||||||| || |||||| || || || | Sbjct 434 CAGGCTCCTTGATCGCATCCTGGTCATAGTAATAGCGTGGTGACTTGCTCAAGAGAAACA 493 Query 2447 TGTACTCGTGCGCCTTTGTGCAGCGGTCGCGCACGCTCTCCGGCATTGGGTTTGGCTTGT 2506 |||||||||||| |||||||| ||||| | | || ||||| || || ||||||| Sbjct 494 GGTACTCGTGCGCTTTTGTGCACCGGTCCCTGGTGGATTCAGGCATCGGATTCGGCTTGT 553 Query 2507 GCCAGATAATATCCTGACGCAGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGCC 2566 |||| || || || || |||||||||||||| || |||| |||||||| || | ||||| Sbjct 554 GCCAAATGATGTCTTGGCGCAGGTACCAGCCATCATCTTGAAGGGCGAAGGCGAGGCGCC 613 Query 2567 AGGG--GATGCCGATAAGGTCTTT-TGCTTTCAATCCGTTAGGTGCAGATCGTGACCCGC 2623 |||| ||||| || | |||||| ||| || | || | || | || ||| | || Sbjct 614 AGGGAATATGCCCATCAAGTCTTTCTGC-TTGAGCCCTATCGGCGGTGACCGTCGCTTGC 672 Query 2624 TGTCGCTGTGGCCTTCTTTCACAACCCGGTTAGCCCCCACGCCTT--TT---TGGTCATT 2678 ||| || || | | | | | | || ||| | | | || || | | Sbjct 673 -CACGCAGT-ACCGCCCCACGCGTCGC-CTGAGAAACCATGTCGTGCTTACCTGCTGA-- 727 Query 2679 TCTTCCAGAATGGTTTCCGCCTTGGCT---GGCATAGCTGTCCCCAAGATTCAACCAAAC 2735 | |||| || ||| ||| | | |||||| |||| || | || | ||| | Sbjct 728 GCCACCAGGTGCGTATCCACCTGCGATTGACGCATAGGTGTCGCCCATGTTTACCCATAG 787 Query 2736 TGTCCCGTCGTCACGCAGCACCCTGCGCACCTCGCGGAACACGCGCACCAG-CGCTTCCA 2794 || ||||| | ||||||||||| ||||| ||||| || || || || ||| | | Sbjct 788 CGTGCCGTCATTACGCAGCACCCGACGCACTTCGCGAAATACCTCAACGAGACGC-CCGA 846 Query 2795 CGAACTCATCCGGTGACGCTTCAAGGCCGAGCTGGCCGTATTGCCCGTAGTCGCGCAGGC 2854 | || ||| | |||| | ||||| |||| ||| |||| ||||||||| ||||| | Sbjct 847 CAAATTCAGCAGGTGTTTCCTCAAGACCGATCTGTCCGTCCATCCCGTAGTCACGCAGCC 906 Query 2855 CGAAGTACGGCGGGGATGTGACGCAACAATTAACGGACTTATCATCCATACCGTC--CAT 2912 || |||| |||||||| |||||||| || || |||| || | | | |||| ||| Sbjct 907 CGTAGTAGGGCGGGGACGTGACGCAGGTGTTCACCGACTGGTCCTTC--AGCGTCCGCAT 964 Query 2913 AGATTCAAGGCAGTCCCCTATTAGAAC 2939 || |||| |||||| || || | ||| Sbjct 965 CGACTCAATGCAGTCGCCGATCAAAAC 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130054949459242