Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq29157 114 3e-20 seq2328 96.9 7e-15 seq11056 89.7 1e-12 seq11297 87.8 4e-12 seq14188 84.2 4e-11 seq451 84.2 4e-11 >seq29157 Length=6873498 Score = 114 bits (126), Expect = 3e-20 Identities = 142/193 (74%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || | |||| |||| ||| || |||||||||| Sbjct 2566416 CTTTTGA-ATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAGA 2566474 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || || ||||| || ||||||||||||||||| || || |||||||| Sbjct 2566475 TCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTTACATTTT 2566534 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | |||||| | ||| || | ||||| ||||| || || || | || || || | Sbjct 2566535 CTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGA 2566594 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 2566595 AAATCTGCATCTT 2566607 >seq2328 Length=1860655 Score = 96.9 bits (106), Expect = 7e-15 Identities = 163/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | ||| ||| ||| | || || |||| Sbjct 1240009 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAG-TGTTGTAGTCAG 1240067 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| || || ||||||||||| | ||| || || ||||| | Sbjct 1240068 ACAAAGTACGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTCT-TGCTGGTCAGGAG 1240126 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||| |||| || || || || || ||||| || | | | |||||| | ||| | Sbjct 1240127 GAATTACTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTGTTGTATCTGAGGGTTCGA 1240186 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || || | || || | || |||||||| || Sbjct 1240187 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 1240238 >seq11056 Length=1110308 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || || ||| | ||| | ||| ||| || || || || ||||| Sbjct 356876 CCACCACGAAGTCTCAACACAGGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 356818 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || ||| |||| ||| ||| || ||||||||||| | ||| || || ||||| || Sbjct 356817 CAGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 356758 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || || || || || ||||||| ||| | ||| || | || || Sbjct 356757 AATTCCTTCCTTGTCCTGGATCTTGGCCATTACATTTTCTATTGTATCCGAGGGTTTGAC 356698 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || || | || || | || |||||||| || Sbjct 356697 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 356647 >seq11297 Length=1864957 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/175 (71%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 || ||| | || || ||| |||| |||| ||| || ||||||||||| | ||| || || Sbjct 1109682 TAGTCAAACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGG 1109741 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 ||||| | |||||||| || || || || ||| |||||||| ||| | ||| | Sbjct 1109742 TCAGGGGAAATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCTATTGTATCCAAG 1109801 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | ||| || || ||||| ||||| || || || | || || || || ||| ||| Sbjct 1109802 GGTTCGACCTCGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCATGAAAATCCGCA 1109855 >seq14188 Length=5250308 Score = 84.2 bits (92), Expect = 4e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| | || ||| |||| |||| || || ||||||||||| | ||| || || ||| Sbjct 4004128 TCAGACAGAGTACGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTTTGCTGGTCA 4004187 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| || || || || || || || || ||| | ||| || | | Sbjct 4004188 GGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCTATTGTATCCGAGGGT 4004247 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| ||||| || || || | || || | || |||||||| || Sbjct 4004248 TCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 4004303 >seq451 Length=5792110 Score = 84.2 bits (92), Expect = 4e-11 Identities = 114/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||| | ||| || || ||||| || |||||||| | Sbjct 4044059 CATCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCT 4044118 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || |||||||| | | | |||||| | ||| |||| ||||| Sbjct 4044119 TATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAGCTTCAAGAGTGG 4044178 Query 192500 TGGT-TTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 |||| | |||| || || || || || ||||||| Sbjct 4044179 TGGTCATCCCCAG--AAGGTCTTCATGAAAATCTGCA 4044213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984092596967550