Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq29157 114 3e-20
seq2328 96.9 7e-15
seq11056 89.7 1e-12
seq11297 87.8 4e-12
seq14188 84.2 4e-11
seq451 84.2 4e-11
>seq29157
Length=6873498
Score = 114 bits (126), Expect = 3e-20
Identities = 142/193 (74%), Gaps = 1/193 (1%)
Strand=Plus/Plus
Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406
|||| || || || || ||||| || || | |||| |||| ||| || ||||||||||
Sbjct 2566416 CTTTTGA-ATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAGA 2566474
Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466
| | ||| || || ||||| || ||||||||||||||||| || || ||||||||
Sbjct 2566475 TCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTTACATTTT 2566534
Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526
||| | |||||| | ||| || | ||||| ||||| || || || | || || || |
Sbjct 2566535 CTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGA 2566594
Query 192527 ATATCTGCATTTT 192539
| |||||||| ||
Sbjct 2566595 AAATCTGCATCTT 2566607
>seq2328
Length=1860655
Score = 96.9 bits (106), Expect = 7e-15
Identities = 163/232 (70%), Gaps = 3/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||| | ||| ||| ||| | || || ||||
Sbjct 1240009 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAG-TGTTGTAGTCAG 1240067
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| || || ||||||||||| | ||| || || ||||| |
Sbjct 1240068 ACAAAGTACGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTCT-TGCTGGTCAGGAG 1240126
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| ||| |||| || || || || || ||||| || | | | |||||| | ||| |
Sbjct 1240127 GAATTACTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTGTTGTATCTGAGGGTTCGA 1240186
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || ||||| ||||| || || || | || || | || |||||||| ||
Sbjct 1240187 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 1240238
>seq11056
Length=1110308
Score = 89.7 bits (98), Expect = 1e-12
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368
||||| | ||| | || || ||| | ||| | ||| ||| || || || || |||||
Sbjct 356876 CCACCACGAAGTCTCAACACAGGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 356818
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| || ||| |||| ||| ||| || ||||||||||| | ||| || || ||||| ||
Sbjct 356817 CAGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 356758
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| || || || || || ||||||| ||| | ||| || | || ||
Sbjct 356757 AATTCCTTCCTTGTCCTGGATCTTGGCCATTACATTTTCTATTGTATCCGAGGGTTTGAC 356698
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| ||||| ||||| || || || | || || | || |||||||| ||
Sbjct 356697 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 356647
>seq11297
Length=1864957
Score = 87.8 bits (96), Expect = 4e-12
Identities = 125/175 (71%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420
|| ||| | || || ||| |||| |||| ||| || ||||||||||| | ||| || ||
Sbjct 1109682 TAGTCAAACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGG 1109741
Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480
||||| | |||||||| || || || || ||| |||||||| ||| | ||| |
Sbjct 1109742 TCAGGGGAAATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCTATTGTATCCAAG 1109801
Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535
| ||| || || ||||| ||||| || || || | || || || || ||| |||
Sbjct 1109802 GGTTCGACCTCGAGAGTGATGGTCTT-CCTGTCAGGGTCTTCATGAAAATCCGCA 1109855
>seq14188
Length=5250308
Score = 84.2 bits (92), Expect = 4e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423
||||| | || ||| |||| |||| || || ||||||||||| | ||| || || |||
Sbjct 4004128 TCAGACAGAGTACGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTTTGCTGGTCA 4004187
Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483
|| || |||||||| || || || || || || || || ||| | ||| || | |
Sbjct 4004188 GGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCTATTGTATCCGAGGGT 4004247
Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || ||||| ||||| || || || | || || | || |||||||| ||
Sbjct 4004248 TCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 4004303
>seq451
Length=5792110
Score = 84.2 bits (92), Expect = 4e-11
Identities = 114/157 (73%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| |||| ||| || ||||||||||| | ||| || || ||||| || |||||||| |
Sbjct 4044059 CATCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCT 4044118
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
|||| || || || |||||||| | | | |||||| | ||| |||| |||||
Sbjct 4044119 TATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAGCTTCAAGAGTGG 4044178
Query 192500 TGGT-TTTACCAGTTAATGTTTTAATAAATATCTGCA 192535
|||| | |||| || || || || || |||||||
Sbjct 4044179 TGGTCATCCCCAG--AAGGTCTTCATGAAAATCTGCA 4044213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984092596967550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |