Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq30298 221 4e-53 seq1156 163 9e-36 >seq30298 Length=5331 Score = 221 bits (244), Expect = 4e-53 Identities = 194/242 (80%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| | Sbjct 2220 GAAGTCGACGTCGAAGTCGGGCATGGACACCCGCTCAGGGTTCAGGAAGCGCTCGAACAG 2161 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || ||| ||||||||||||||||||||||| ||| |||||||| ||||||||||| Sbjct 2160 CAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATCTTGAGCACGTAGGCCACCAGCGAACC 2101 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 || | |||||||| ||||| || ||| |||||||| | ||| ||||| |||||| Sbjct 2100 TGCACCCGAGCCTCGGCCAGGCCCCACCGGTACGCCGTTGTTCTTGGCCCACTTGATGAA 2041 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 41029 |||| |||| |||||||| |||||||||||||||||||| || || | |||| | Sbjct 2040 GTCCATCACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCGAA 1981 Query 41030 CT 41031 || Sbjct 1980 CT 1979 Score = 122 bits (134), Expect = 3e-23 Identities = 217/311 (70%), Gaps = 8/311 (3%) Strand=Plus/Minus Query 39639 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39698 || |||||| || ||| |||| ||| ||||| ||||| || || |||| | | || Sbjct 3356 GCAGCCATGAACGGGGCCGGGTGGTGGGTCTTGAGCCAGGCTGTCTGGTAGGACACCAGG 3297 Query 39699 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39758 || || || |||||||| | |||||||||| |||| || |||||| | | || ||| Sbjct 3296 CCATAGGCGGCCGAGTGAGACTTGTTGAAGCCGTAACCTGCGAACTTCTCTACCAGGTCG 3237 Query 39759 CACAC--TGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTC--TGGAA 39814 | | |||| | | | || ||| | || | | || | || || || || Sbjct 3236 AAGATGTTGCCCGCAAGATCCCCATCGATT--CCATTATTG-GCACAGCCATCAATGAAA 3180 Query 39815 GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAG 39874 | || || |||||||| |||||||||||||||||||||||||||| || |||| Sbjct 3179 CCGC-CGCGCTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGCAT 3121 Query 39875 GTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTG 39934 |||||| ||| | ||||||||| ||||| ||||| || | || | ||| |||||||| Sbjct 3120 GTCGGCGCCACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTG 3061 Query 39935 GTAGATGATGA 39945 || | ||||| Sbjct 3060 ATACAGGATGA 3050 >seq1156 Length=1237 Score = 163 bits (180), Expect = 9e-36 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||| ||||| ||||||||||| || || || |||||||||||||| ||||| | Sbjct 777 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 718 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || | | || |||||||| |||||||||||| | |||||||| |||||||| || Sbjct 717 CAGGTCATATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCC 658 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 || | || || || |||||||| ||| || ||||| | || ||||| |||| || Sbjct 657 AGCACCTGACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAA 598 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 41027 |||| |||| |||||||| ||||| ||||||||||| || || || | |||| Sbjct 597 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164784678319684