Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq1734 315 3e-81 seq8977 298 3e-76 >seq1734 Length=3873 Score = 315 bits (348), Expect = 3e-81 Identities = 564/816 (69%), Gaps = 17/816 (2%) Strand=Plus/Plus Query 65068 CATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGG 65127 |||| ||||||||||| | | |||||| ||| ||||| ||||| || || | || Sbjct 373 CATTTCCACCGGCTCTCTGGGGCTGGACATCGCGCTGGGTATCGGCGGTCTGCCAAAAGG 432 Query 65128 CCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGC 65187 ||| | || |||||||||||||| ||||| ||||| || | || || ||| | Sbjct 433 CCGTATCGTCGAAATCTACGGCCCGGAATCGTCAGGTAAAACCACGCTCACGCTCTCGGT 492 Query 65188 GGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCT 65247 | ||| | || ||||| || | || | || | | |||| || ||||| | || Sbjct 493 CATCGCCGAAGCCCAGAAAAGTGGCGCCACCTGTGCGTTCGTCGATGCCGAGCATGCTCT 552 Query 65248 GGACCCTGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAG 65305 || || |||||||| ||| || || || || | ||| |||| |||| ||| Sbjct 553 TGATCCGGAGTACGCT--GGCAAACTGGGCGTCAACGTAGACGACCTGCTGGTTTCGCAG 610 Query 65306 CCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA-GCT 65364 || ||||| || |||||||| ||||| || ||| | | || ||| | | || Sbjct 611 CCTGACACGGGTGAGCAGGCGCTGGAAATTACCGACATGTTGGTACGGTC---CAATGCG 667 Query 65365 GTCCA--TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 65422 ||| | || || |||| ||||| |||||||| ||||| || || || |||||||| Sbjct 668 GTCGACGTCATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCTGAAATCGAAGGC 727 Query 65423 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 65482 || || || |||| ||||| ||| |||| || || || ||||| ||||| |||||||| Sbjct 728 GAAATGGGTGACATGCACGTGGGCTTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAG 787 Query 65483 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 65542 ||||||| | |||| | | ||||| ||| ||| |||||||| | || | Sbjct 788 ATCACCGGTAACATCAAGAACGCCAACTGCCTGGTTATCTTCATCAACCAGATCCGTATG 847 Query 65543 AAGATCGGCA--ACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGA 65600 ||||||||| | || | || ||||| || |||||||| |||||||| || ||| Sbjct 848 AAGATCGGCGTGATGTTCGGTA--GCCCG---GAAACCACCACCGGCGGCAACGCACTGA 902 Query 65601 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 65660 |||||| ||||| || ||| |||| |||| |||| || | | ||||||||||| | Sbjct 903 AGTTCTATGCCTCGGTTCGCCTGGACATCCGCCGCACCGGTGCAGTCAAGGAAGGCGACG 962 Query 65661 AGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACC 65720 ||| || || | ||||| || ||| |||||||||||||| |||| || ||| || Sbjct 963 AGGTGGTGGGTAGTGAAACCCGCGTCAAGATCGTCAAGAACAAGGTGGCGCCACCGTTCC 1022 Query 65721 GCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCG 65780 | | || || ||| | ||||||| |||| |||| ||| | | ||| || ||| Sbjct 1023 GTCAAGCGGAATTCCAGATTCTGTACGGCAAGGGTATCTACCGTAACGGTGAAATCATCG 1082 Query 65781 ACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACA 65840 | |||| |||||| ||||||||||| |||| ||||||||||||| || ||| | || Sbjct 1083 ATCTGGGCGTGTCTCAGGGCCTGGTCGAGAAATCGGGCGCCTGGTACAGCTACCAAGGCA 1142 Query 65841 AGAACGTCGCTCAGGGCAAGCCCAAGGCCGTCCAGT 65876 | || ||| |||||||||| | || || | | ||| Sbjct 1143 ACAAGATCGGTCAGGGCAAGGCGAATGCTGCCAAGT 1178 >seq8977 Length=2429 Score = 298 bits (330), Expect = 3e-76 Identities = 570/836 (68%), Gaps = 13/836 (2%) Strand=Plus/Minus Query 65069 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 65128 ||| |||| |||||| | | ||||||| ||| || ||||| || || || | ||| Sbjct 2110 ATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 2051 Query 65129 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65188 || | || ||||||||||| || |||||||| || || | || ||| || | | Sbjct 2050 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 1991 Query 65189 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 65248 | ||| | |||||||| || | || | || | | ||||||| |||||| ||||| Sbjct 1990 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 1931 Query 65249 GACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 65306 || ||||| |||||| ||| ||| || || || | || |||| |||| |||| Sbjct 1930 GATCCTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGATGACCTGCTGGTTTCCCAGC 1873 Query 65307 CGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 65366 ||||||| |||||||| |||||||| ||| ||| | || || || || | Sbjct 1872 CGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCG 1813 Query 65367 CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 65426 | | |||| || ||||| ||||| |||||||| || || || |||||||||| | Sbjct 1812 ACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAA 1753 Query 65427 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 65486 | || |||| ||||| |||||||| || ||||| ||||| ||||| |||| || ||| Sbjct 1752 TGGGCGACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCA 1693 Query 65487 CCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 65546 |||| | |||| | | ||||| ||| | ||| |||||||| | || ||||| Sbjct 1692 CCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGA 1633 Query 65547 TCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 65606 ||||| || | | ||||| || |||||||| || || || || ||| ||||| Sbjct 1632 TCGGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 1576 Query 65607 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTG 65666 |||| || ||||| ||||| |||| || | | | | | ||||||||| || |||| || Sbjct 1575 ACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTG 1516 Query 65667 TCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACG 65726 | || | | ||||| || |||||||| |||||||| | |||||||| ||| | | Sbjct 1515 TTGGTAGCGAAACCCGCGTCAAGGTCGTGAAGAACAAAGTTGCCCCGCCATTCCGTCAGG 1456 Query 65727 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGG 65786 | |||||| | | ||||| |||| |||| | | | ||| | ||||||||| Sbjct 1455 CTGAGTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGATCGACCTGG 1396 Query 65787 CCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT---TCAAGTACGGGGACAAGA 65843 ||| ||| || | || ||||||| || ||||||| | | |||| ||||| Sbjct 1395 GCGTACTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACGGCAGCAAGA 1336 Query 65844 ACGTCGCTCAGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATC 65899 ||| |||||||||| |||| | | | ||| || || |||||||| ||| Sbjct 1335 ---TCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGATATC 1283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242139729603521