Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_021317.1 Length=21248 Score E Sequences producing significant alignments: (Bits) Value seq698 673 0.0 >seq698 Length=3433 Score = 673 bits (746), Expect = 0.0 Identities = 778/1043 (75%), Gaps = 6/1043 (1%) Strand=Plus/Plus Query 18090 ACGCCAGTTACCAGGAACGCAATCGGCACATGCTTACGGTCAACTACACGGTTCCAGTTG 18149 || ||||| |||||||| || ||||| | ||||| || || | || |||||||||||| Sbjct 191 ACACCAGTAACCAGGAAGGCGATCGGGATGTGCTTGCGCTCCATCACGCGGTTCCAGTTG 250 Query 18150 GTAGCGTTAGCCAGGTCTTGCCAGCTAGCGGAGCGGGCGGTAGTCTCGGTGCCGTTGCCG 18209 || || ||||| || |||||| || ||||| | || |||||||||||||||||| Sbjct 251 GTGGCCAGCGCCAGATCCTGCCAGGAGGCAGAGCGCGGCGTGGTCTCGGTGCCGTTGCCG 310 Query 18210 GTGATTACAGCGCTGGTGAAGCTGTAACCAAACGGATGCAGCAACCACGTTTTACGAGTC 18269 ||||| || ||| ||||| || | ||| ||||||| ||| || || || || Sbjct 311 GTGATGGTGGCCGACAGGAAACTGTAGCCGAGCGGGTGCAGCAGCCAGGTCTTGCGGCTC 370 Query 18270 CACAGGGTTTCAACACCACCACCATTAGCACGAGATGCTTCACGTTCGTATTCCAGCGGC 18329 ||||| |||||| || ||||| ||| | |||| ||| || ||||| | || Sbjct 371 CACAGCACTTCAACGCCGCCACCGTTACCGCGAGCCTCTTGGCGCTCGTAGGCGGTTGGA 430 Query 18330 ATCTCAGGATTGCCTTCGCCGTAACCGATAGCACCCTGGCCGAAGATGATGGAGATGAAT 18389 |||||| |||||| |||||||||||||||||||| || ||||| | | |||||| Sbjct 431 TGCTCAGGGGAGCCTTCACCGTAACCGATAGCACCCTGACCAAAGATCACGCTGATGAAC 490 Query 18390 TTACGGCTAGTGTCCTGA-CCAACTACGGTCATGCTGTCATCGACGATGACGCGGTAACC 18448 || || | || || | || | |||||||| |||||||| | | |||||| || Sbjct 491 TTGCG-CGAGCTGCCGGTGCCGATCACGGTCATCTGGTCATCGATCACCAGGCGGTAGCC 549 Query 18449 CTGGTAGGTGGCGAACATGGTGTTGTTCTCAGCATCACGGATGAAGTCGATAAGCTGGGC 18508 ||||||||| |||| | ||||||||| ||||| ||||||||||||||||| | ||| Sbjct 550 CTGGTAGGTCGCGATCTGGGTGTTGTTGTCAGCGTCACGGATGAAGTCGATCATCTGCTT 609 Query 18509 TTTACGGGCCTGT--GCGTATACGAAGCTGTGCATTGCGATAGCACCGAGAACCTCACCG 18566 |||| || ||| | || |||||||| |||| || || | ||||| |||| ||| Sbjct 610 CTTAC--GCATGTCGCCATACACGAAGCTATGCACCGCCATGACGCCGAGCACCTGGCCG 667 Query 18567 CCGTTGCCCATCAATGCATCGCCCATAGTCTGGGTAGCATCGATGAATGCACCTGCGTCG 18626 || | |||||||| ||||| ||||| |||||||| || |||||||| || || || ||| Sbjct 668 CCAGTCCCCATCAACGCATCACCCATGGTCTGGGTCGCGTCGATGAAGGCGCCCGCATCG 727 Query 18627 AAGCCTGAAGTTGCAGAAACGTCGACCACCATGTCGTTCTGCTCGTGATATGCATCAGTA 18686 || || || || |||||||||| ||||||||||||||| || | |||||||| Sbjct 728 AAACCGCCAGCAGCGGAAACGTCGATCACCATGTCGTTCTGGGTATGGAACGCATCAGTT 787 Query 18687 GCGGATACGTTGTCGTTGTACAGACCGAGGGCGGTAGCAATCAGACGACGCTGCGCCTGA 18746 ||| | |||||||||||| | ||| || | ||| || | ||| || ||||| ||||| Sbjct 788 GCGCCGATGTTGTCGTTGTAGATACCCAGAGAGGTGGCCAACAGCCGGCGCTGAGCCTGG 847 Query 18747 CGCTGCCAGAAGTTATCCAGACGGGATGCGACGGACTGCAACGGATTCTGGCTGGTAAGT 18806 |||||||||||||| ||||| || | || ||||| |||| ||| |||| |||||| || Sbjct 848 CGCTGCCAGAAGTTGTCCAGGCGAGCAGCAACGGATTGCAGCGGGTTCTTGCTGGTCAGC 907 Query 18807 TCTACAGTCAGGTCTGCCTGGCCGAAACCTTCGTTCAGATATGCAACGCGGGCCATCATT 18866 || ||||||||||| |||||||| ||||||||||| || || ||||| ||||||| ||| Sbjct 908 TCGACAGTCAGGTCGGCCTGGCCAAAACCTTCGTTGAGGTACGCAACACGGGCCAGCATA 967 Query 18867 TCACCGGTCTGAATAGCGCGCGGGGTCGCGATGTCCTGGTATACGTCATTCGAGTAGTTA 18926 || ||||| | ||| |||||| || | ||| ||| || || ||||||||||| Sbjct 968 TCGCCGGTTTCAATGTTGCGCGGCTCTGCCACGTCGGCGTACACATCGTTCGAGTAGTTC 1027 Query 18927 GGCTCGATAGAAGTATCGATAGCTTTCCAGAACGGCAGGTTAGCGATGTTAGACGGTCCG 18986 ||||||| || | ||||| | |||||| |||| | ||| |||||||| ||||| ||| Sbjct 1028 GGCTCGACGGATGCGTCGATCGACTTCCAGTACGGGATGTTCGCGATGTTCGACGGGCCG 1087 Query 18987 CGGGCAATCTCGGCAGCATACGGAGTTGGGGTCAAAATTCCGGAGTTGAAAAACGCGGTT 19046 || || ||||| ||||| ||||| |||||||| | ||| ||||| | ||| |||||||| Sbjct 1088 CGTGCGATCTCAGCAGCGTACGGGGTTGGGGTGAGAATGCCGGACTCGAAGAACGCGGTC 1147 Query 19047 TTCTCTACCGGGTCTTCCGTCATATAGGACGCCAGTACAGGGATATTGCCAGTTACGATG 19106 || || |||||||||| |||| || || | ||| || ||||| || || || | ||| Sbjct 1148 TTTTCAACCGGGTCTTGGGTCAGGTACGAGGTCAGCACCGGGATGTTACCGGTGATGATA 1207 Query 19107 TTACCAATAGTGGTGATTGCCAT 19129 ||||| || |||||||| | ||| Sbjct 1208 TTACCGATCGTGGTGATAGGCAT 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 67851096222609