Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq30298 214 6e-51 seq1156 168 2e-37 >seq30298 Length=5331 Score = 214 bits (236), Expect = 6e-51 Identities = 216/279 (77%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 40215 ACGTACTGGATGACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCA 40272 ||||| | ||||||| | | || |||| ||| |||||||| ||||| ||||||| Sbjct 2255 ACGTAGTCGATGACCCGGTCCCG--GCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCA 2198 Query 40273 TGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40332 ||||||| ||||| |||||||||||||||||||| | || ||| |||||||||||| Sbjct 2197 TGGACACCCGCTCAGGGTTCAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGA 2138 Query 40333 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGC 40392 ||||||||||| ||| |||||||| ||||||||||| || | ||||| || ||||| | Sbjct 2137 GGTCGGTGATCTTGAGCACGTAGGCCACCAGCGAACCTGCACCCGAGCCTCGGCCAGGCC 2078 Query 40393 CGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40452 | ||| || ||||| | ||| ||||| |||||||||| |||| |||||||| Sbjct 2077 CCACCGGTACGCCGTTGTTCTTGGCCCACTTGATGAAGTCCATCACGATCAGGAAGTAAC 2018 Query 40453 ACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACT 40491 ||||| |||||||||||||| || || | |||| ||| Sbjct 2017 CGGGGAAGCCCATCTGGATGATGATATCCAGCTCGAACT 1979 Score = 123 bits (136), Expect = 8e-24 Identities = 216/309 (70%), Gaps = 8/309 (3%) Strand=Plus/Minus Query 39099 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGT 39158 || |||||| || |||||||| ||| ||||| | ||| || || |||| | | || Sbjct 3356 GCAGCCATGAACGGGGCCGGGTGGTGGGTCTTGAGCCAGGCTGTCTGGTAGGACACCAGG 3297 Query 39159 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCC 39218 || || || |||||||| | |||||||||| |||| || ||||| | | || ||| Sbjct 3296 CCATAGGCGGCCGAGTGAGACTTGTTGAAGCCGTAACCTGCGAACTTCTCTACCAGGTCG 3237 Query 39219 CACAC--TGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTC--TGGAA 39274 | | |||| | | | || ||| | || | | || | || || || || Sbjct 3236 AAGATGTTGCCCGCAAGATCCCCATCGATT--CCATTATTG-GCACAGCCATCAATGAAA 3180 Query 39275 GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAG 39334 | || || |||||||| |||||||||||||||||||||||||||| || |||| Sbjct 3179 CCGC-CGCGCTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGCAT 3121 Query 39335 GTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTG 39394 |||||| ||||| ||||||||| ||||| ||||| || | || | |||||||||||| Sbjct 3120 GTCGGCGCCACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTG 3061 Query 39395 GTAGATGAT 39403 || | ||| Sbjct 3060 ATACAGGAT 3052 >seq1156 Length=1237 Score = 168 bits (186), Expect = 2e-37 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||| ||||| ||||||||||| || || || ||||||||||| || ||||| | Sbjct 777 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 718 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || | | || |||||||| |||||||||||| | |||||||| |||||||| || Sbjct 717 CAGGTCATATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCC 658 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 || | || ||||| |||||||| ||| || ||||| | || ||||| |||| || Sbjct 657 AGCACCTGACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAA 598 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487 |||| |||| |||||||| ||||||||||||||||| || || || | |||| Sbjct 597 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163265232689334