Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_021339.1
Length=51077
Score E
Sequences producing significant alignments: (Bits) Value
seq30298 214 6e-51
seq1156 168 2e-37
>seq30298
Length=5331
Score = 214 bits (236), Expect = 6e-51
Identities = 216/279 (77%), Gaps = 4/279 (1%)
Strand=Plus/Minus
Query 40215 ACGTACTGGATGACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCA 40272
||||| | ||||||| | | || |||| ||| |||||||| ||||| |||||||
Sbjct 2255 ACGTAGTCGATGACCCGGTCCCG--GCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCA 2198
Query 40273 TGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40332
||||||| ||||| |||||||||||||||||||| | || ||| ||||||||||||
Sbjct 2197 TGGACACCCGCTCAGGGTTCAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGA 2138
Query 40333 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGC 40392
||||||||||| ||| |||||||| ||||||||||| || | ||||| || ||||| |
Sbjct 2137 GGTCGGTGATCTTGAGCACGTAGGCCACCAGCGAACCTGCACCCGAGCCTCGGCCAGGCC 2078
Query 40393 CGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40452
| ||| || ||||| | ||| ||||| |||||||||| |||| ||||||||
Sbjct 2077 CCACCGGTACGCCGTTGTTCTTGGCCCACTTGATGAAGTCCATCACGATCAGGAAGTAAC 2018
Query 40453 ACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACT 40491
||||| |||||||||||||| || || | |||| |||
Sbjct 2017 CGGGGAAGCCCATCTGGATGATGATATCCAGCTCGAACT 1979
Score = 123 bits (136), Expect = 8e-24
Identities = 216/309 (70%), Gaps = 8/309 (3%)
Strand=Plus/Minus
Query 39099 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGT 39158
|| |||||| || |||||||| ||| ||||| | ||| || || |||| | | ||
Sbjct 3356 GCAGCCATGAACGGGGCCGGGTGGTGGGTCTTGAGCCAGGCTGTCTGGTAGGACACCAGG 3297
Query 39159 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCC 39218
|| || || |||||||| | |||||||||| |||| || ||||| | | || |||
Sbjct 3296 CCATAGGCGGCCGAGTGAGACTTGTTGAAGCCGTAACCTGCGAACTTCTCTACCAGGTCG 3237
Query 39219 CACAC--TGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTC--TGGAA 39274
| | |||| | | | || ||| | || | | || | || || || ||
Sbjct 3236 AAGATGTTGCCCGCAAGATCCCCATCGATT--CCATTATTG-GCACAGCCATCAATGAAA 3180
Query 39275 GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAG 39334
| || || |||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 3179 CCGC-CGCGCTGCTTGGCCATTTCCTCGGGCTTCTTCTTGCCCATCGCCCGACGCAGCAT 3121
Query 39335 GTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTG 39394
|||||| ||||| ||||||||| ||||| ||||| || | || | ||||||||||||
Sbjct 3120 GTCGGCGCCACCCAAGGTGTACCCCGCCATCACCTGGGCGATCTGCATCACCTGCTCCTG 3061
Query 39395 GTAGATGAT 39403
|| | |||
Sbjct 3060 ATACAGGAT 3052
>seq1156
Length=1237
Score = 168 bits (186), Expect = 2e-37
Identities = 180/238 (76%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309
|||||||| ||||| ||||||||||| || || || ||||||||||| || ||||| |
Sbjct 777 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 718
Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369
|| | | || |||||||| |||||||||||| | |||||||| |||||||| ||
Sbjct 717 CAGGTCATATTCAAGCGGGTCAAGGTCGGTGATCTTCTGTACGTAGGCCACCAGCGAGCC 658
Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429
|| | || ||||| |||||||| ||| || ||||| | || ||||| |||| ||
Sbjct 657 AGCACCTGACCCCCGACCAGGGCCTACCGGTACACCGTTGTTTTTGGCCCACTGGATAAA 598
Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487
|||| |||| |||||||| ||||||||||||||||| || || || | ||||
Sbjct 597 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163265232689334
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |