Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_021777.1 Length=43447 Score E Sequences producing significant alignments: (Bits) Value seq698 643 3e-180 >seq698 Length=3433 Score = 643 bits (712), Expect = 3e-180 Identities = 779/1054 (74%), Gaps = 24/1054 (2%) Strand=Plus/Minus Query 8786 ATGGCAATTACCACTATTGGCAACATCGTAACTGGCAATATCCCTGTGCTGGCGTCTTAC 8845 ||| | || ||||| || || || ||| | || || || ||||| |||||| | || ||| Sbjct 1230 ATGCCTATCACCACGATCGGTAATATCATCACCGGTAACATCCCGGTGCTGACCTCGTAC 1171 Query 8846 ATGACCGAAGACCCGGTAGAGAAAACCGCGTTTTTCGACTCCGGTATCATTACTCCGACC 8905 ||||| |||||||||| || || |||||||| ||||| ||||| || | || || ||| Sbjct 1170 CTGACCCAAGACCCGGTTGAAAAGACCGCGTTCTTCGAGTCCGGCATTCTCACCCCAACC 1111 Query 8906 CCGTACGCGTCTGAGATTGCCAAGGGGCCATCCAACATTGCTAACCTGCCGTTCTGGAAG 8965 |||||||| ||||||| || || || || ||||| || ||| | |||| ||||||| Sbjct 1110 CCGTACGCTGCTGAGATCGCACGCGGCCCGTCGAACATCGCGAACATCCCGTACTGGAAG 1051 Query 8966 GCTATCGATACTTCTATCGAACCTAACTATTCGAACGATGTGTACCAAGATATCGCTACT 9025 | ||||| | || |||| || ||||| ||||||||||||||| || | || Sbjct 1050 TCGATCGACGCATCCGTCGAGCCGAACTACTCGAACGATGTGTACGCCGACGTGGCAGAG 991 Query 9026 CCGCGCGCTATTCAGACCGGTGAGATGATGGCCCGCGTCGCCTATCTGAACGAAGGCTTT 9085 |||||| ||| | ||||| || ||| ||||||| || || || || |||||||| ||| Sbjct 990 CCGCGCAACATTGAAACCGGCGATATGCTGGCCCGTGTTGCGTACCTCAACGAAGGTTTT 931 Query 9086 GGCCAGGCTGACCTGACGGTAGAACTGACCAGCCAGAATCCGTTGCAGTCTGTAGCGTCT 9145 |||||||| |||||||| || || ||||||||| |||| ||| |||| || || || || Sbjct 930 GGCCAGGCCGACCTGACTGTCGAGCTGACCAGCAAGAACCCGCTGCAATCCGTTGCTGCT 871 Query 9146 CGTCTGGATAACTTCTGGCAGCGTCAGGCGCAGCGTCGTCTTATCGCAACCGCTCTCGGC 9205 || ||||| |||||||||||||| ||||| ||||| || || | || ||| |||| || Sbjct 870 CGCCTGGACAACTTCTGGCAGCGCCAGGCTCAGCGCCGGCTGTTGGCCACCTCTCTGGGT 811 Query 9206 CTGTACAACAACAACGTATCCGCTGATGATGATTACCACAAGAAGGGTGACATGGTGGTC 9265 | |||||| ||||| | ||| ||||| | ||| | || ||||||||| || Sbjct 810 ATCTACAACGACAACATCGGCGCAACTGATGCGTTCCATACCCAGAACGACATGGTGATC 751 Query 9266 GATGTGTCTGCATCTGCAAACAAAGGCTTCGACGCAGGCGCATTCATCGACGCTACCCAG 9325 || || || || ||| || ||||| || ||||| ||||||||||| |||||| Sbjct 750 GACGTTTCCGCTGCTG------GCGGTTTCGATGCGGGCGCCTTCATCGACGCGACCCAG 697 Query 9326 ACTATGGGTGACGCGTTGATGGGCAGCAGTGGTGAGGTTCTCGGTGCTATCGCGATGCAC 9385 || |||||||| ||||||||||| | | || |||| ||||| | || ||| |||| Sbjct 696 ACCATGGGTGATGCGTTGATGGGGACTGGCGGCCAGGTGCTCGGCGTCATGGCGGTGCAT 637 Query 9386 AGCTTTGTGTACG--CACAGGCCCGTAAAGCCCAGCTTATCGACTTCATCCGTGATGCCG 9443 ||||| ||||| | ||| | ||||| ||| | ||||||||||||||||| || | Sbjct 636 AGCTTCGTGTATGGCGACATG--CGTAAGAAGCAGATGATCGACTTCATCCGTGACGCTG 579 Query 9444 AGAACAACACCATGTTCGCCACCTACCAGGGTTATCGCGTTATCGTTGATGACAGCATGA 9503 | ||||||||| | |||| ||||||||||| || ||| | | | |||||| |||| Sbjct 578 ACAACAACACCCAGATCGCGACCTACCAGGGCTACCGCCTGGTGATCGATGACCAGATGA 519 Query 9504 CCGTAGTTGG-TCAGGACACTAGCCGTAAATTCATCTCCATCATCTTCGGGCAAGGTGCT 9562 |||| | || | || || | || || |||||| | | ||||| || || |||||| Sbjct 518 CCGTGATCGGCACCGGCAGCTCG-CGCAAGTTCATCAGCGTGATCTTTGGTCAGGGTGCT 460 Query 9563 ATCGGTTACGGCGAAGGCAACC-----CGTCCAACCCGCTGGAATACGAGCGCGAAGCGT 9617 ||||||||||| |||||| || | ||||||| | ||||||||| ||| | Sbjct 459 ATCGGTTACGGTGAAGGCTCCCCTGAGCATCCAACC-----GCCTACGAGCGCCAAGAGG 405 Query 9618 CTCGCGGCAACGGTGGCGGTGTTGAAACCCTGTGGACTCGTAAGACCTGGTTGCTGCACC 9677 ||||||| ||||||||||| |||||| ||||||| || ||||||||| ||||||||| Sbjct 404 CTCGCGGTAACGGTGGCGGCGTTGAAGTGCTGTGGAGCCGCAAGACCTGGCTGCTGCACC 345 Query 9678 CGTTCGGCTACAGCTTCACCAGCGCTGTAATCACCGGTAACGGCACCGAGACTATCGCC- 9736 || |||||||||| ||| || |||||||| |||||||||||||| | |||| Sbjct 344 CGCTCGGCTACAGTTTCCTGTCGGCCACCATCACCGGCAACGGCACCGAGACCA-CGCCG 286 Query 9737 CGCTCCGCTAGCTGGCAGGACCTGGCTAACGCGACCAACTGGAACCGTGTAGTTGACCGC 9796 ||||| || ||||||||| ||||| || |||||||||||||| || | || ||| Sbjct 285 CGCTCTGCCTCCTGGCAGGATCTGGCGCTGGCCACCAACTGGAACCGCGTGATGGAGCGC 226 Query 9797 AAGCATGTGCCGATTGCGTTCCTGGTAACTGGTG 9830 ||||| | ||||| || |||||||| ||||||| Sbjct 225 AAGCACATCCCGATCGCCTTCCTGGTTACTGGTG 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138858137616554