Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq9203 486 5e-133 seq28753 107 5e-19 >seq9203 Length=13179 Score = 486 bits (538), Expect = 5e-133 Identities = 702/980 (72%), Gaps = 8/980 (1%) Strand=Plus/Minus Query 23385 GGTCTATTTTTTACTTCAATATAGATTCTACCTATATATTCTCCGAGAACACCAATCCCG 23444 ||||| | |||||| ||| | || || | || |||||||| || || |||||||| || Sbjct 11507 GGTCTTTGTTTTACCTCAGTGTATATGCGCCCGATATATTCACCCAGCACACCAATACCT 11448 Query 23445 ATCAGTTGCACTCCACCCAAGAAA-AGTATTGATACAAGCAGGGAGGGATACCCGCGTAC 23503 |||| ||| | ||||| |||||| || || || || || || || ||||| || | || Sbjct 11447 ATCAATTGAATGCCACC-AAGAAACAGAATGGAGACGAGTAGCGATGGATAACCAGGCAC 11389 Query 23504 TGGGTTACCAAAGACAAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCT 23563 | ||||| ||| || | || || | ||| | |||||| |||||||| | | Sbjct 11388 AGCATTACCCCAGATAACTTTATCAATTACCATGAAGCTACCATACAAAAATGAGCAGGT 11329 Query 23564 TGCAACAAACAAGCCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGAT 23623 || |||||||| |||| ||| |||||||| | ||||| | | |||||| || || || Sbjct 11328 AGCCACAAACAACCCTAAATATGTCCATACTCTTAGAGGTACAGATGAAAAGCTGGTTAT 11269 Query 23624 ACCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACACG 23683 ||||| | ||||||||||||||||||||||||||||| ||||| |||||| | Sbjct 11268 TCCTTCAATCGCCAGATTCCATAATTTCCAGCCATTAAACTTTGAATCCCCAGCAGACCT 11209 Query 23684 CTCTGCGCGTACA-TATTCCACGACATCCGTCTGACCACCCACCCAGCTCAGTATGCCTT 23742 ||||| | || | ||||| || | || | | || | |||| || ||| |||| Sbjct 11208 TTCTGCTC-TAGAGTATTCAACCAGTTCAATATTTCCGCTTGCCCATGACAATATCCCTT 11150 Query 23743 TCATGAAAAGATTGCGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGA 23802 |||| || | |||||||||||||| ||| |||| || || || |||| | ||||| | Sbjct 11149 TCATAAACAAATTGCGCTCAGGCAGCAGCTTAACATTTTCGACTGCCTCTCTTGACATTA 11090 Query 23803 GTCGAAAATCTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAATTTAT 23862 |||| ||||| || ||||| || || || | || || || ||||| ||||| || ||| Sbjct 11089 GTCGGAAATCACCTACATTCTCTTCAATTCTCGGCGTACTGATTTTATTGTGGCATCTAT 11030 Query 23863 AGAACCACTCAGCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAG 23922 | |||||||| ||||| || | ||||| | || | ||||| || | ||| || | Sbjct 11029 AAAACCACTCGGCTGTTTTCCTTTTCAACCAGTTTTCTTTAGAGCGATCAGTACGCTTGG 10970 Query 23923 CAAGCACCATGTCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATAACCTCAATTG 23982 | | ||| | ||||| ||| |||||| ||| |||||| | || || || ||||| | Sbjct 10969 CTAACACTACATCAGCCCCTAACTGCCATTTTCTAATAAGCTCTGGAATTACTTCAATGG 10910 Query 23983 GGTCTTGCAGGTCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTG 24042 | || || || || |||||||| |||||||||||||| || | |||| |||| || | Sbjct 10909 GATCCTGAAGATCTACATCAATTGGAATTACAGCATCTCCAGTCGCATATTCTATACCAG 10850 Query 24043 CAAATAAGGCTGGTTCTTTACCAAAGTTGCGTGTAAATGACAGCGGAACAACTAGCGGGT 24102 |||||| ||||| |||||||| || || || || || |||| | ||||| | Sbjct 10849 CAAATAGCGCTGGCTCTTTACCGAAATTTCGGGTGAAGCTTAGCGCCATCACTAGACAAT 10790 Query 24103 CTGAAACAGCCAGCGCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGA 24162 ||| | || |||||||| ||||||| ||||| | ||| ||||||||||||| Sbjct 10789 CTGCAGTCGCATATTTATTAATAATCAACTCTGTTGCATCGTGACTACCGTCATTTATGA 10730 Query 24163 ATACAATTTCTACTTCATA-TGGCTTCAACTCTTGGAATTCACGTACCGTTTTATAGAAA 24221 | | |||||||||||||| | || ||||||||| | |||||| || | ||||||||| Sbjct 10729 AGATTATTTCTACTTCATACTCGC-TCAACTCTTTGTTTTCACGAACGGCTTTATAGAAG 10671 Query 24222 ACAGGTATCGCTTCTTCTTCATTGAAGACAGGAACGACAAGAGATATTTTCATTTCGCAT 24281 | |||||| || |||||||||||||| ||||| || || | ||||||||||||| || Sbjct 10670 ATAGGTATTGCATCTTCTTCATTGAAAACAGGTACAACCAATGATATTTTCATTTTTTAT 10611 Query 24282 CCCTAAAGACAATGAACTTTGAATAGACGAAACCGCAC-ACCAGACTGATGGCGGAGAAG 24340 | |||| ||||| | ||||| || | ||| || ||| | || || || || || || Sbjct 10610 CTTTAAAAACAATCAGTTTTGAGTAAAAGAATCC-CACAATCAAGCTAATTGCAGAAAAT 10552 Query 24341 GTGATAAGAGTGACTATTGG 24360 || || || || | ||||| Sbjct 10551 GTTATCAGCGTTAAAATTGG 10532 >seq28753 Length=697 Score = 107 bits (118), Expect = 5e-19 Identities = 274/407 (67%), Gaps = 15/407 (4%) Strand=Plus/Minus Query 39263 TAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTG 39322 |||||||| ||| |||||||| | |||| || | || | ||| ||||| || | Sbjct 519 TAACCCACGGTCGGTATCCATTCTGTTTTCAAGCTGCGAAATACGCGCTCCATCGGTGCG 460 Query 39323 TTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAAC 39382 ||||||||||||||||| || || ||||| ||||| | || ||||||||||||| | Sbjct 459 TTATCCCAGCAGTTTCCTCGTCGACTCATGCTCTGGCGCATGCGGTATCGCCACAACCGC 400 Query 39383 TGCCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCC 39442 || || || | | ||| | ||| || ||||| || |||||| | || | Sbjct 399 TG-GCGAAAGAGTCGGCTTGCATATTGCGATCCCTGGTCCGAGTGGAATAGCAGGTCCGA 341 Query 39443 GGGCTTACCACGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGC-CTGCTGTCCG 39501 ||| | ||||| || | ||||| |||||||||| || ||| | || ||| | Sbjct 340 AGGCCTGCCACGCTGCTCGTAAGCCATATCCAGCGCTTAGATCACCAGCTCAGC-GTCTG 282 Query 39502 GCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAAC--AGGTCGAGAACAACGGC 39559 || ||||| ||||||||||| | | ||| || || || || || || || Sbjct 281 GCTTTTCCGACAGCGCCCAGCCCAC--GATCCGACGCGTACAAAGATCCAGGACGACAGC 224 Query 39560 GAGGTACGCCCAGCGCTTACC---CGTCCAGATATAGGTCACATCACCGCACCACACCTG 39616 ||||| ||| ||| || || ||| || | ||| ||| |||||||| || || Sbjct 223 CAGGTAATGCCA---CTTTCCTTGCGCCCAAATGTGGGTGGTATCGCCGCACCAGACTTG 167 Query 39617 ATTTGGCTCGGTCACGGCGAACT-GCCTTTCAAGGTAGTTAGGGATA 39662 ||| ||| | | |||| |||||| || ||||| || ||| |||||| Sbjct 166 ATTGGGCGCTGGCACGTCGAACTCGCGGTTCAATGT-GTTCGGGATA 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132550039125922