Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4839 123 2e-23 seq29157 122 8e-23 seq11056 111 1e-19 seq11297 96.9 3e-15 seq9861 95.1 1e-14 seq20241 93.3 4e-14 seq24420 87.8 2e-12 >seq4839 Length=4080137 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || |||||||| || || || || || || || ||| Sbjct 529645 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 529704 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 529705 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 529764 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | ||||||||||||||||||||||| ||| | | | | |||| || || || Sbjct 529765 GCAGAGGCTCATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 529824 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || ||||| || || ||| |||| |||| ||| | ||||| Sbjct 529825 CATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 529872 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | || ||||| || || || || || || || || Sbjct 528503 ACAATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCC 528562 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| || ||||| || || || || || Sbjct 528563 AGTGACACCATCGAGAACGTCAAGGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCAGAC 528622 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||||||||||||||||||||| ||| | | | | |||| || || Sbjct 528623 CAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 528682 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || ||||| || ||| |||| Sbjct 528683 AACATCCAGAAAGAGTCGACCCTGCACCTGGT 528714 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || |||||||| || || || || || || || ||| Sbjct 528733 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 528792 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 528793 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 528852 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| |||||||||||||||||||| ||| | | | || ||||| || Sbjct 528853 GCAGAGGCTGATTTTTGCCGGGAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 528912 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || ||||| || ||| |||| Sbjct 528913 CATCCAGAAAGAGTCGACCCTGCACCTGGT 528942 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || |||||||| || || || || || || || ||| Sbjct 528961 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 529020 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 529021 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 529080 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| || ||||||||||| ||| | | | || ||||| || Sbjct 529081 GCAGAGGTTGATCTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 529140 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || ||||| || ||| |||| Sbjct 529141 CATCCAGAAAGAGTCGACCCTGCACCTGGT 529170 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || |||||||| || || || || || || || ||| Sbjct 529189 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 529248 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 529249 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 529308 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | ||||||||||||||||||||||| ||| | | | || ||||| || Sbjct 529309 GCAGAGGCTCATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 529368 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || ||||| || ||| |||| Sbjct 529369 CATCCAGAAAGAGTCGACCCTGCACCTGGT 529398 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || |||||||| || || || || || || || ||| Sbjct 529417 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 529476 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 529477 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 529536 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| || ||||||||||| ||| | | | || ||||| || Sbjct 529537 GCAGAGGTTGATCTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 529596 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || ||||| || ||| |||| Sbjct 529597 CATCCAGAAAGAGTCGACCCTGCACCTGGT 529626 >seq29157 Length=6873498 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || || || || || || || ||| | || ||| | | Sbjct 2566605 GATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTCAAGGTTGAACCTTC 2566546 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| ||||||||||| ||||||||||| ||||| || || Sbjct 2566545 AGATACAATAGAAAATGTAAAGGCCAAGATCCAAGATAAAGAAGGAATCCCTCCTGACCA 2566486 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATA 24881 ||| | |||||||||| || || || |||||||| | | | || |||| || || | Sbjct 2566485 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAGGA-TGGCCATACTTTGTCTGACTACA 2566427 Query 24882 ACATTCAAAAGGAATCGAC 24900 ||||||||||||| || || Sbjct 2566426 ACATTCAAAAGGAGTCCAC 2566408 >seq11056 Length=1110308 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || ||||| || || || | Sbjct 356650 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAACCCTCG 356709 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| |||| |||||||| ||||| |||||||| ||||| || || Sbjct 356710 GATACAATAGAAAATGTAATGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 356769 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || || || | ||| ||| | | |||| || || ||| Sbjct 356770 CAAAGACTGATCTTTGCTGGCAAGCAACGGGAAGATGGACGTACTCTGTCTGACTACAAC 356829 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||||||||| || || || || |||||| || | || || |||| Sbjct 356830 ATTCAAAAGGAGTCCACTCTTCATCCTGTGTTGAGACTTCGTGGTGGCG 356878 >seq11297 Length=1864957 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||| ||| || || || || || || || || || || || ||||| || ||| || | Sbjct 1109855 TGCGGATTTTCATGAAGACCCTGACAGG-AAGACCATCACTCTCGAGGTCGAACCCTTGG 1109797 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 | ||| |||||| ||||| |||||||| ||||| |||||||| | || || || | Sbjct 1109796 ATACAATAGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 1109737 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 || | |||||||||| || || || ||||| ||| | | ||| || || ||| Sbjct 1109736 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTTTGACTACCACA 1109677 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||| || || || || | |||||| || Sbjct 1109676 TTCAAAAGGAGTCCACCCTTCATATCGTGTTGAGA 1109642 >seq9861 Length=3422124 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || | | || || || || || || ||||| || ||| || | Sbjct 2119575 GATGCAGATTTTTGTGAAGATCCGGACAGGGAAGACCATCACTCTCGAGGTCGAACCCTC 2119634 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| ||||| ||||||||||| || |||| ||| ||| | || || Sbjct 2119635 GGATACGATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGTAATTCCTTCTGACCA 2119694 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| ||| |||||| || || || | ||| ||| | | |||| || | || Sbjct 2119695 GCAACGACTGACCTTTGCTGGCAAGCAACGGGAAGATGGACGTATTTTGTCTGACCACAA 2119754 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||| || || || || | ||||| || Sbjct 2119755 CATTCAAAAGGAGTCTACTCTTCATCTTTTGTTGAGA 2119791 >seq20241 Length=2711202 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 1753355 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1753296 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 1753295 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCA 1753236 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || ||||||||||| ||| | | | || ||||| || Sbjct 1753235 GCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTACAA 1753176 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || || || ||||| || ||| |||| | || || | |||||| Sbjct 1753175 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGAGGC 1753127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 1753583 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1753524 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 1753523 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCA 1753464 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || ||||||||||| ||| | | | || ||||| || Sbjct 1753463 GCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTACAA 1753404 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || ||||| || ||| |||| Sbjct 1753403 CATCCAGAAAGAGTCGACCCTGCACCTGGT 1753374 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 1753811 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1753752 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 1753751 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCA 1753692 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || ||||||||||| ||| | | | || ||||| || Sbjct 1753691 GCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTACAA 1753632 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || ||||| || ||| |||| Sbjct 1753631 CATCCAGAAAGAGTCGACCCTGCACCTGGT 1753602 >seq24420 Length=3268280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||| | || || || || || || ||||| ||| Sbjct 2497668 ATGCAGATCTTCGTGAAGACCCTGACCTGCAAGACCATCACCCTGGAGGTAGAGCCCAGT 2497609 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || |||||||| || || ||||| || Sbjct 2497608 GACACTG-AGAA--TGTGAAGGCCAAGATCCAGGATAAAGAAGGCAT-CCCCCCGACCAG 2497553 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||| || |||||| |||| ||| | | | || ||||| ||| Sbjct 2497552 CAGAGGCTCCTCTTTGCAGGCAAACAGATGGAAGATGGCCGCACTCTTTCTGATTACAAC 2497493 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || ||||| |||||| |||| Sbjct 2497492 ATCCAGAAAGAGTCGACCCTACACCTGGT 2497464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449724878687640