Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq18056 239 7e-58 seq2883 239 7e-58 seq2733 192 1e-43 seq17968 129 1e-24 seq15391 107 3e-18 seq18487 100 5e-16 seq10015 98.7 2e-15 seq21746 93.3 7e-14 seq15155 91.5 2e-13 >seq18056 Length=8613 Score = 239 bits (264), Expect = 7e-58 Identities = 332/457 (73%), Gaps = 11/457 (2%) Strand=Plus/Minus Query 35452 GGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGT 35511 |||| || || ||||||||| || || |||||||| ||| ||| || | ||| || Sbjct 8339 GGGTGACGCCACGCTGGCCCTGATACTTGCCGCCGCGGTCCCGGTAGGACACTTCACATG 8280 Query 35512 CCTCGTCACTCTCGAA-AAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCC 35570 |||||| || | |||||||||||||||| | |||||||| ||||| | ||| Sbjct 8279 GCTCGTCCGACTGCAGGAAACAGCATCTGCGCCCCCCCTTCGTTGGCGTAGATCTTGGCC 8220 Query 35571 GGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGC 35630 |||| |||| |||||| ||||||||| ||||| || |||||||| ||||| |||||| Sbjct 8219 GGCAACGTGGTGGTGTTGGAGAACTCCAGCGTCACGTGGCCTTCCCATTCAGGCTCCAGC 8160 Query 35631 GGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACG 35690 || ||||||||||||||||| || || ||||| ||||||||||| |||| || | Sbjct 8159 GGGGTCACGTTGACGATGATGCCGCAACGCGCATAGGTGCTCTTGCCCAGGCAGATGGTC 8100 Query 35691 AGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGC 35750 || |||| |||||| ||||||||||| || || ||||||||||| || ||| ||| ||| Sbjct 8099 AGCACGTCGCGCGGGATGCGGAAGTACTCCACGGTGCGTGCCAGTGCAAAGGAGTTGGGC 8040 Query 35751 GGAATCAGGATGC---TGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTT 35806 || || ||||| ||| ||| | | | | | || || |||||||||||| Sbjct 8039 GGGAT---GATGCACACGTCGCTCTTGA-TGTCGACGAAGCTGCCGGCATCGAAGTTCTT 7984 Query 35807 CGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCA 35865 ||| || || || |||||| ||||| ||||| | | || ||||| ||| |||| Sbjct 7983 CGGGTCGACGGTGGCCGAGTTGATATTGGTAAAGACCTTGAATTCGTCGGC-GCAGCGCA 7925 Query 35866 CGTCATAACCATACGACGAGTTGCCGTACGAGATAAC 35902 |||| || || || ||| |||| | ||||| || Sbjct 7924 CGTCGTAGCCGTAGCTCGAAACGCCGAAAGAGATGAC 7888 >seq2883 Length=1484 Score = 239 bits (264), Expect = 7e-58 Identities = 323/446 (72%), Gaps = 8/446 (2%) Strand=Plus/Plus Query 35466 TGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTCG 35525 |||||||| || || || | || |||||||| || | ||| ||| |||| || || Sbjct 105 TGGCCCTGATACTTGCCCGCACGGTCCTTGTAGGACACTTCACAGGCCTCATCGGACTGC 164 Query 35526 AAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGTG 35585 | ||||||||||| ||||| |||||||| ||||| | |||||||| | |||| ||| Sbjct 165 AGGAACAGCATCTGTGCCACGCCTTCGTTGGCGTAGATTTTCGCCGGCAAGGTGGTGGTG 224 Query 35586 TTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACG 35645 ||| ||| ||||| || || || |||||||||||||| || |||||||| || |||||| Sbjct 225 TTGGAGAATTCCAGGGTGACGTGGCCTTCCCACTCAGGCTCAAGCGGCGTGACATTGACG 284 Query 35646 ATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGA 35705 || || || ||||| || |||||||| ||||||| || | || |||| ||| || Sbjct 285 ATAATGCCGCAGCGGGCATAGGTGCTTTTACCCAGGCAGATGGTCAGCACGTCGCGAGGG 344 Query 35706 ATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGC-- 35763 || |||||| | || || ||||| ||||| |||||| ||| ||||| || ||||| Sbjct 345 ATACGGAAGAACTCCACGGTGCGCGCCAGGGCGAAGGAGTTGGGCGGGAT---GATGCAC 401 Query 35764 -TGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTGC 35821 ||| ||| | || | | | || ||| |||||||| |||||||| || | || Sbjct 402 ACGTCGCTCTTGA-CGTCGACGAAGCTCTTTTCGTCGAAGTTTTTCGGATCGACGATCGC 460 Query 35822 GCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATAACCATACGA 35881 |||||||||||||| || | | |||||||| ||||||||| || ||||| Sbjct 461 CGAATTGATGTTGGTGAACACCTTGAATTCATCGGCGCAACGCACGTCGTAGCCATAGCT 520 Query 35882 CGAGTTGCCGTACGAGATAACGTGCT 35907 || ||||||||| || ||| ||| Sbjct 521 GGAAACGCCGTACGAAATCACGCGCT 546 >seq2733 Length=8656 Score = 192 bits (212), Expect = 1e-43 Identities = 226/303 (75%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 35454 GTCACACC-CGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTC 35512 |||||||| ||| || ||||| ||||| ||||| |||||||| || || |||| || | Sbjct 7874 GTCACACCTCGT-TGTCCCTGATATTTCCCGCCACGATCCTTATAAGAAGTTTCACACAC 7816 Query 35513 CTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGG 35572 || ||||| || |||||||||||||| || ||||| || || || | |||||| || Sbjct 7815 TTCATCACTTTCAAAAAACAGCATCTGAGCAACACCCTCACCTGCATAAATACGCGCTGG 7756 Query 35573 CAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGG 35632 || |||||||| || || || | || ||||| ||||||||||| || |||||||| Sbjct 7755 CAAATTGGTAGTATTTGAAAATTCTAACGTAACATGGCCTTCCCACTCTGGCTCCAGCGG 7696 Query 35633 CGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAG 35692 ||| || || || || ||||| ||||| || |||||| ||||||| ||| | || Sbjct 7695 CGTGACATTAACAATAATACCGCAGCGTGCATAGGTGGATTTACCCAGACAAATTGTTAG 7636 Query 35693 GACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGG 35752 || ||||| ||||| ||||| || || ||||| || |||| ||| || ||| || || Sbjct 7635 TACATTGCGTGGAATACGGAAATACTCTACCGTACGGGCCAAAGCAAATGAGTTAGGTGG 7576 Query 35753 AAT 35755 ||| Sbjct 7575 AAT 7573 >seq17968 Length=506 Score = 129 bits (142), Expect = 1e-24 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 120226 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA 120285 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 253 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGA 194 Query 120286 TCCCTGATGCCGGCACCAT 120304 | |||| |||||||||||| Sbjct 193 TTCCTGGTGCCGGCACCAT 175 >seq15391 Length=1804 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 247003 GTGCCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCG 247062 || |||| ||||||||||||||||||||||||||||| || || | || || || || | Sbjct 1660 GTTCCAGGCGTGCGATGATTTCGGAGTTCATGCTGCGGTGATGATTGCGAGCCACCTCGG 1601 Query 247063 CGATGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGCTG 247121 | |||||||| ||||| || || |||| ||| ||||| || ||||| || | |||||| Sbjct 1600 CAATGCGTTCCCGCATTCCGTCTGGCAGACGTACGACGAATTTGTCAGCCGTACGGCTG 1542 >seq18487 Length=4867 Score = 100 bits (110), Expect = 5e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 247006 CCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCGCGA 247065 |||| ||||| ||||| || |||||||||||||| ||||| | || || || || |||| Sbjct 4592 CCAGGCGTGCAATGATCTCCGAGTTCATGCTGCGGTGGTGGTTGCGTGCTACCTCGGCGA 4533 Query 247066 TGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGCT 247120 |||| || ||||| || || |||| || ||||| |||||||| || ||||||| Sbjct 4532 TGCGCTCACGCATCCCGTCTGGCAGGCGAACGACGAACTTGTCAGCAGTGCGGCT 4478 >seq10015 Length=7542 Score = 98.7 bits (108), Expect = 2e-15 Identities = 75/85 (88%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA-T 120286 ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| | Sbjct 2170 GCCGGCATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCACAGTTCGAAT 2111 Query 120287 CCCTGATGCCGGCACCATATTCTCT 120311 || || |||||||||||| |||||| Sbjct 2110 CCGTG-TGCCGGCACCAT-TTCTCT 2088 >seq21746 Length=2732 Score = 93.3 bits (102), Expect = 7e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 122605 CGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCGAG 122664 ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| Sbjct 1521 CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAA 1462 Query 122665 TCCAACACGACCCACCAGTTT 122685 ||| ||||||||||||| ||| Sbjct 1461 TCCCACACGACCCACCATTTT 1441 >seq15155 Length=4091 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 122603 TTCGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCG 122662 || |||||||||||||||||||||||||| ||||||||| ||||||| |||||| Sbjct 2503 TTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCG 2562 Query 122663 AGTCCAACACGACCCACCAGTTT 122685 | ||| ||||||||||||| ||| Sbjct 2563 AATCCCACACGACCCACCATTTT 2585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825599720216520