Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq9203 425 1e-114 >seq9203 Length=13179 Score = 425 bits (470), Expect = 1e-114 Identities = 690/985 (70%), Gaps = 6/985 (1%) Strand=Plus/Minus Query 21742 TAGCGAGGTCTCTGTTTAACTTCGGTATAAATCCGGCCAATGTACTCGCCCAAAACTCCG 21801 || || ||||| ||||| || || || || || || || || || || |||| || || Sbjct 11513 TACCGCGGTCTTTGTTTTACCTCAGTGTATATGCGCCCGATATATTCACCCAGCACACCA 11454 Query 21802 ATACCAATGAGCTGCACACCACCGAGAAAAAGTATTGATACCAGCAATGATGGATAACCG 21861 ||||| || | || | ||||| ||||| || || || || || | ||||||||||| Sbjct 11453 ATACCTATCAATTGAATGCCACCAAGAAACAGAATGGAGACGAGTAGCGATGGATAACCA 11394 Query 21862 CGCACAGGATTCCCGAATGCAAGCGTATCAATGATCATCCAGGCACCGTACAGGAAAGC- 21920 |||||| ||| || | || ||||||| | ||| || ||| |||| || | Sbjct 11393 GGCACAGCATTACCCCAGATAACTTTATCAATTACCATGAAGCTACCATACAAAAATGAG 11334 Query 21921 CAGGCCTGCAACGAACAGGCCAATGTACGTCCACATGCGTAACGGAAATGTTGAGAAGCT 21980 |||| || || |||| || | || ||||| | | || || | | ||| ||||| Sbjct 11333 CAGGTA-GCCACAAACAACCCTAAATATGTCCATACTCTTAGAGGTACAGATGAAAAGCT 11275 Query 21981 GGTAATCCCTTCAAGCGCCAGGTTCCAGAGCTTCCAGCCATTAAACTTAGTGCTGCCAGC 22040 ||| || ||||||| |||||| ||||| | ||||||||||||||||| | ||||| Sbjct 11274 GGTTATTCCTTCAATCGCCAGATTCCATAATTTCCAGCCATTAAACTTTGAATCCCCAGC 11215 Query 22041 AACACGCTCAGCGCGAGCATATTCAACAACATCTGTACTCCCACCAACCCAGCTCAATAC 22100 | | || || | || |||||||| | || || | || | |||| ||||| Sbjct 11214 AGACCTTTCTGCTCTAGAGTATTCAACCAGTTCAATATTTCCGCTTGCCCATGACAATAT 11155 Query 22101 TCCTTTCATGAACAGGTTGCGTTCTGGTAATAATTTAATGTTTTCCACAACTCCGCGAGA 22160 |||||||| |||| ||||| || || | | |||| ||||| || | | | || Sbjct 11154 CCCTTTCATAAACAAATTGCGCTCAGGCAGCAGCTTAACATTTTCGACTGCCTCTCTTGA 11095 Query 22161 CATTAGTCGGAAATCGCCGACGTTCTCCTCAATCTTTGGATTGCTTATTTTATTGTGAAG 22220 ||||||||||||||| || || ||||| ||||| | || | || ||||||||||| Sbjct 11094 CATTAGTCGGAAATCACCTACATTCTCTTCAATTCTCGGCGTACTGATTTTATTGTGGCA 11035 Query 22221 TTTATAGAACCACTCAGCAGTCATGCGCTTCAGTCTTCCGTCTGTAGAACGGTCTGAGCG 22280 | |||| |||||||| || || | | |||| | ||| |||| || || | || Sbjct 11034 TCTATAAAACCACTCGGCTGTTTTCCTTTTCAACCAGTTTTCTTTAGAGCGATCAGTACG 10975 Query 22281 CTTAGCCAGTACCATATCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATAACCTC 22340 ||| || | || | |||||| ||| |||||| ||| |||||| | || || || || Sbjct 10974 CTTGGCTAACACTACATCAGCCCCTAACTGCCATTTTCTAATAAGCTCTGGAATTACTTC 10915 Query 22341 AATCGGGTCCTGCAGATCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAA 22400 ||| || ||||| ||||| |||||||| |||||||||||||| || | |||| |||| Sbjct 10914 AATGGGATCCTGAAGATCTACATCAATTGGAATTACAGCATCTCCAGTCGCATATTCTAT 10855 Query 22401 CCCTGCAAATAAGGCTGGTTCTTTACCAAAGTTGCGTGTAAATGACAGCGGAACAACTAG 22460 || ||||||| ||||| |||||||| || || || || || |||| | ||||| Sbjct 10854 ACCAGCAAATAGCGCTGGCTCTTTACCGAAATTTCGGGTGAAGCTTAGCGCCATCACTAG 10795 Query 22461 CGGGTCTGAAACAGCCAGCGCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATT 22520 |||| | || |||||||| ||||||| ||||| | ||| |||||||| Sbjct 10794 ACAATCTGCAGTCGCATATTTATTAATAATCAACTCTGTTGCATCGTGACTACCGTCATT 10735 Query 22521 TATGAATACAATTTCTACTTCATA-TGGCTTCAACTCTTGGAATTCACGTACCGTTTTAT 22579 |||||| | |||||||||||||| | || ||||||||| | |||||| || | ||||| Sbjct 10734 TATGAAGATTATTTCTACTTCATACTCGC-TCAACTCTTTGTTTTCACGAACGGCTTTAT 10676 Query 22580 AGAAAACAGGTATCGCTTCTTCTTCATTGAAGACAGGAACGACAAGAGATATTTTCATTT 22639 |||| | |||||| || |||||||||||||| ||||| || || | ||||||||||||| Sbjct 10675 AGAAGATAGGTATTGCATCTTCTTCATTGAAAACAGGTACAACCAATGATATTTTCATTT 10616 Query 22640 CGCATCCCTAAAGACAATGAACTTTGAATAGACGAAACCGCAC-ACCAGACTGATGGCGG 22698 ||| |||| ||||| | ||||| || | ||| || ||| | || || || || | Sbjct 10615 TTTATCTTTAAAAACAATCAGTTTTGAGTAAAAGAATCC-CACAATCAAGCTAATTGCAG 10557 Query 22699 AGAAGGTGATAAGAGTGACTATTGG 22723 | || || || || || | ||||| Sbjct 10556 AAAATGTTATCAGCGTTAAAATTGG 10532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127057643026320