Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq1734 311 4e-80 seq8977 293 1e-74 >seq1734 Length=3873 Score = 311 bits (344), Expect = 4e-80 Identities = 563/816 (69%), Gaps = 17/816 (2%) Strand=Plus/Plus Query 64676 CATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGG 64735 |||| ||||||||||| | | |||||| ||| ||||| ||||| || || | || Sbjct 373 CATTTCCACCGGCTCTCTGGGGCTGGACATCGCGCTGGGTATCGGCGGTCTGCCAAAAGG 432 Query 64736 CCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGC 64795 ||| | || |||||||||||||| ||||| ||||| || | || || ||| | Sbjct 433 CCGTATCGTCGAAATCTACGGCCCGGAATCGTCAGGTAAAACCACGCTCACGCTCTCGGT 492 Query 64796 GGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCT 64855 | ||| | || ||||| || | || | || | | |||| || ||||| | || Sbjct 493 CATCGCCGAAGCCCAGAAAAGTGGCGCCACCTGTGCGTTCGTCGATGCCGAGCATGCTCT 552 Query 64856 GGACCCTGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAG 64913 || || |||||||| ||| || || || || | ||| |||| |||| ||| Sbjct 553 TGATCCGGAGTACGCT--GGCAAACTGGGCGTCAACGTAGACGACCTGCTGGTTTCGCAG 610 Query 64914 CCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA-GCT 64972 || ||||| || |||||||| ||||| || ||| | | || ||| | | || Sbjct 611 CCTGACACGGGTGAGCAGGCGCTGGAAATTACCGACATGTTGGTACGGTC---CAATGCG 667 Query 64973 GTCCA--TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 65030 ||| | || || |||| ||||| |||||||| ||||| || || || |||||||| Sbjct 668 GTCGACGTCATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCTGAAATCGAAGGC 727 Query 65031 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 65090 || || || |||| ||||| ||| |||| || || || ||||| ||||| |||||||| Sbjct 728 GAAATGGGTGACATGCACGTGGGCTTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAG 787 Query 65091 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 65150 ||||||| | |||| | | ||||| ||| ||| |||||||| | || | Sbjct 788 ATCACCGGTAACATCAAGAACGCCAACTGCCTGGTTATCTTCATCAACCAGATCCGTATG 847 Query 65151 AAGATCGGCA--ACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGA 65208 ||||||||| | || | || ||||| || |||||||| |||||||| || ||| Sbjct 848 AAGATCGGCGTGATGTTCGGTA--GCCCG---GAAACCACCACCGGCGGCAACGCACTGA 902 Query 65209 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 65268 |||||| ||||| || ||| |||| |||| |||| || | | ||||||||||| | Sbjct 903 AGTTCTATGCCTCGGTTCGCCTGGACATCCGCCGCACCGGTGCAGTCAAGGAAGGCGACG 962 Query 65269 AGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACC 65328 ||| || || | ||||| || ||| |||||||||||||| |||| || ||| || Sbjct 963 AGGTGGTGGGTAGTGAAACCCGCGTCAAGATCGTCAAGAACAAGGTGGCGCCACCGTTCC 1022 Query 65329 GCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCG 65388 | | || || ||| | ||||||| |||| |||| ||| | | ||| || ||| Sbjct 1023 GTCAAGCGGAATTCCAGATTCTGTACGGCAAGGGTATCTACCGTAACGGTGAAATCATCG 1082 Query 65389 ACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACA 65448 | |||| |||||| ||||||||||| |||| ||||||||||||| || ||| | || Sbjct 1083 ATCTGGGCGTGTCTCAGGGCCTGGTCGAGAAATCGGGCGCCTGGTACAGCTACCAAGGCA 1142 Query 65449 AGAACGTCGCCCAGGGCAAGCCCAAGGCCGTCCAGT 65484 | || ||| ||||||||| | || || | | ||| Sbjct 1143 ACAAGATCGGTCAGGGCAAGGCGAATGCTGCCAAGT 1178 >seq8977 Length=2429 Score = 293 bits (324), Expect = 1e-74 Identities = 569/836 (68%), Gaps = 13/836 (2%) Strand=Plus/Minus Query 64677 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 64736 ||| |||| |||||| | | ||||||| ||| || ||||| || || || | ||| Sbjct 2110 ATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 2051 Query 64737 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 64796 || | || ||||||||||| || |||||||| || || | || ||| || | | Sbjct 2050 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 1991 Query 64797 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 64856 | ||| | |||||||| || | || | || | | ||||||| |||||| ||||| Sbjct 1990 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 1931 Query 64857 GACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 64914 || ||||| |||||| ||| ||| || || || | || |||| |||| |||| Sbjct 1930 GATCCTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGATGACCTGCTGGTTTCCCAGC 1873 Query 64915 CGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 64974 ||||||| |||||||| |||||||| ||| ||| | || || || || | Sbjct 1872 CGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCG 1813 Query 64975 CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 65034 | | |||| || ||||| ||||| |||||||| || || || |||||||||| | Sbjct 1812 ACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAA 1753 Query 65035 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 65094 | || |||| ||||| |||||||| || ||||| ||||| ||||| |||| || ||| Sbjct 1752 TGGGCGACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCA 1693 Query 65095 CCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 65154 |||| | |||| | | ||||| ||| | ||| |||||||| | || ||||| Sbjct 1692 CCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGA 1633 Query 65155 TCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 65214 ||||| || | | ||||| || |||||||| || || || || ||| ||||| Sbjct 1632 TCGGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 1576 Query 65215 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTG 65274 |||| || ||||| ||||| |||| || | | | | | ||||||||| || |||| || Sbjct 1575 ACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTG 1516 Query 65275 TCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACG 65334 | || | | ||||| || |||||||| |||||||| | |||||||| ||| | | Sbjct 1515 TTGGTAGCGAAACCCGCGTCAAGGTCGTGAAGAACAAAGTTGCCCCGCCATTCCGTCAGG 1456 Query 65335 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGG 65394 | |||||| | | ||||| |||| |||| | | | ||| | ||||||||| Sbjct 1455 CTGAGTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGATCGACCTGG 1396 Query 65395 CCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT---TCAAGTACGGGGACAAGA 65451 ||| ||| || | || ||||||| || ||||||| | | |||| ||||| Sbjct 1395 GCGTACTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACGGCAGCAAGA 1336 Query 65452 ACGTCGCCCAGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATC 65507 ||| ||||||||| |||| | | | ||| || || |||||||| ||| Sbjct 1335 ---TCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGATATC 1283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237258357457003