Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq12372 152 1e-32 seq7504 152 1e-32 seq4096 100 8e-17 seq9311 98.7 3e-16 >seq12372 Length=38393 Score = 152 bits (168), Expect = 1e-32 Identities = 196/268 (73%), Gaps = 12/268 (4%) Strand=Plus/Minus Query 23450 TGTCCACCACAATTTCGGTGGTGTAG---TTGGTCGCGCCGTCTTTTTCCCACTTGCGTG 23506 |||| || | ||||| |||||||| ||| | |||||| || ||||||| ||| | Sbjct 38295 TGTCGACAATGATTTCAGTGGTGTAACGCTTGAT---GCCGTCCTTCTCCCACTCGCGGG 38239 Query 23507 TCTGCAGCTTGCCGATGATCGCGCATTCACTTCCCTTGCGCAGATACTCGCCGGCAATCT 23566 | ||||||||||| ||| ||||| || |||||||| ||||||||||| |||| Sbjct 38238 TTTGCAGCTTGCCTTCGATGTAGCATTGGGAACCTTTGCGCAGGTACTCGCCGGCGATCT 38179 Query 23567 CGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGT---CTTTTCCTTGCGCTCGC 23623 |||| ||||||||||| ||| ||||||||||| ||||| || |||| || | Sbjct 38178 CGGCCACCTTGCCGAACAACGACACGCGGTGCCACTCGGTGCGCTCGACCTT---CTGCC 38122 Query 23624 CGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGC 23683 |||| |||||||| |||| || ||||||||||||| ||| || || | || Sbjct 38121 CGGTTTGCTTGTCGGTCCACTGCTCGCTGGTGGCCAGGCTGAGGTTAGTTACCGCGTTGC 38062 Query 23684 CGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 ||||| ||||||| || ||||| ||||| Sbjct 38061 CGTTTGGCAGGTAACGGACTTCGGGGTC 38034 >seq7504 Length=9783 Score = 152 bits (168), Expect = 1e-32 Identities = 196/268 (73%), Gaps = 12/268 (4%) Strand=Plus/Minus Query 23450 TGTCCACCACAATTTCGGTGGTGTAG---TTGGTCGCGCCGTCTTTTTCCCACTTGCGTG 23506 |||| || | ||||| ||||||||| ||| | ||||||||||||||||| || | Sbjct 3110 TGTCAACGATGATTTCAGTGGTGTAGCGCTTGAT---GCCGTCTTTTTCCCACTCACGGG 3054 Query 23507 TCTGCAGCTTGCCGATGATCGCGCATTCACTTCCCTTGCGCAGATACTCGCCGGCAATCT 23566 ||||||||||||| ||| ||| | || |||||||| |||||||||||||||| Sbjct 3053 TCTGCAGCTTGCCTTCGATGTAGCACTGCGAACCTTTGCGCAGGTACTCGCCGGCAATCT 2994 Query 23567 CGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGT---CTTTTCCTTGCGCTCGC 23623 | || ||||||||||| | | || |||||||||||||| || |||| || || Sbjct 2993 CAGCAACCTTGCCGAACAGCGACACACGGTGCCATTCGGTACGCTCGACCTT---CTGGC 2937 Query 23624 CGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGC 23683 | | ||||||||| |||| || || |||||||| | |||| ||||||| | Sbjct 2936 CCGACTGCTTGTCGGTCCATTGCTCGCTGGTTGCCAGGCTCAGGTTGGTCACGGCATTAC 2877 Query 23684 CGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 |||| |||||||||| ||||| || || Sbjct 2876 CGTTGGGCAGGTAGCGGACTTCGGGATC 2849 >seq4096 Length=1707 Score = 100 bits (110), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| || |||||||||||||||||||||| | ||||||||||||| |||||||||| Sbjct 1585 ATGGCGCGCCTGACAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATC 1526 Query 21122 CAGCTGAGCTACGGG 21136 || ||||||||| || Sbjct 1525 CAACTGAGCTACAGG 1511 >seq9311 Length=16340 Score = 98.7 bits (108), Expect = 3e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| |||| ||||| ||||||||| |||| | ||||||||||||| ||||||||||| Sbjct 3982 TGGCGCACCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCC 3923 Query 21123 AGCTGAGCTACGGG 21136 |||||||||||||| Sbjct 3922 AGCTGAGCTACGGG 3909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139232401066556