Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq11056 104 2e-17 seq29157 102 6e-17 seq4839 98.7 8e-16 >seq11056 Length=1110308 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| || || | | || || ||| || |||| Sbjct 356853 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCCGTTG 356794 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| ||||||||| || || ||||| || || ||||| || | || Sbjct 356793 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTT 356734 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||| |||||| || || || ||| || || ||||| || || || || || Sbjct 356733 GGCCATTACATTTTCTATTGTATCCGAGGGTTTGACCTCGAGAGTGATGGTCTTCCCCGT 356674 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | ||| || || || |||||||| || Sbjct 356673 CAGGGTCTTCACGAAAATCTGCATATT 356647 >seq29157 Length=6873498 Score = 102 bits (112), Expect = 6e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 29589 CGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCC 29648 |||||| || ||||||||||| || || | | || | ||| || ||||| ||||| Sbjct 2566407 CGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCC 2566466 Query 29649 AGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTT 29708 |||| | |||| ||||||||| || || || || || ||||| ||||| | || || Sbjct 2566467 AGCAAAGATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTT 2566526 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| |||||| || || ||| |||| || | ||||| || || || || || | ||| Sbjct 2566527 TACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGT 2566586 Query 29769 TTTAACAAATATCTGCATTTT 29789 || | || |||||||| || Sbjct 2566587 CTTCATGAAAATCTGCATCTT 2566607 >seq4839 Length=4080137 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||| || || ||||||||||| || ||||| || || | Sbjct 529872 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 529813 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | || | || ||||| || || || Sbjct 529812 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 529753 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | || | |||||| | || || Sbjct 529752 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 529693 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || | ||| || || || |||||||| Sbjct 529692 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385075006795533