Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq12372 154 4e-33 seq7504 140 9e-29 seq12606 125 2e-24 seq30539 109 2e-19 seq26727 102 2e-17 >seq12372 Length=38393 Score = 154 bits (170), Expect = 4e-33 Identities = 236/334 (71%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | || |||||| |||| |||||||| ||||| || || ||||| || | Sbjct 38323 CCGCCTAGCAACTGCATGGTGCCGTTGATGTCGACAATGATTTCAGTGGTGTAACGCT-- 38266 Query 30116 TGA--CCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCT 30173 ||| ||||||| | || |||| || ||| || || |||| ||| ||| Sbjct 38265 TGATGCCGTCCTTCTCC---CACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGCATTGGG 38209 Query 30174 GACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGT 30233 ||| || | || || ||| ||||||| |||| ||| ||||| ||| |||||||| Sbjct 38208 AACCTTTGCGCAGGTACTCGCCGGCGATCTCGGCCACCTTGCCGAACAACGACACGCGGT 38149 Query 30234 GCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGG 30293 |||| ||||||||||| | ||| ||||| |||||||| |||| ||||||||||| Sbjct 38148 GCCACTCGGTGCGCTCGACCTTCTGCCCGGTTTGCTTGTCGGTCCACTGCTCGCTGGTGG 38089 Query 30294 CGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCAC 30353 | ||| ||| ||| || ||||| |||||||| |||| || || ||| ||||| | Sbjct 38088 CCAGGCTGAGGTTAGTTACCGCGTTGCCGTTTGGCAGGTAACGGACTTCGGGGTCCTGTC 38029 Query 30354 CGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 || | |||||||| || ||||| || ||||| Sbjct 38028 CGCAAGTCCCAACCAGGATCACTTTATTTACGCC 37995 >seq7504 Length=9783 Score = 140 bits (154), Expect = 9e-29 Identities = 235/335 (70%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | || |||||| |||| ||||| |||||||| || || |||||||| | Sbjct 3138 CCGCCCAGCAGCTGCATGGTGCCGTTGATGTCAACGATGATTTCAGTGGTGTAGCGCT-- 3081 Query 30116 TGA--CCGTCCTGCGCCTGCCACTTTCGAGTTCTG-AGTGAACCCTCGACGTACAGTTGC 30172 ||| ||||| | || |||| || || ||| || || |||| ||| ||| Sbjct 3080 TGATGCCGTCTTTTTCC---CACTCACGGGT-CTGCAGCTTGCCTTCGATGTAGCACTGC 3025 Query 30173 TGACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGG 30232 ||| || | || || ||| | ||||| || | ||| ||||| | | ||| ||| Sbjct 3024 GAACCTTTGCGCAGGTACTCGCCGGCAATCTCAGCAACCTTGCCGAACAGCGACACACGG 2965 Query 30233 TGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTG 30292 ||||||||||| ||||| | |||||| | ||||||||| |||| ||||||||| Sbjct 2964 TGCCATTCGGTACGCTCGACCTTCTGGCCCGACTGCTTGTCGGTCCATTGCTCGCTGGTT 2905 Query 30293 GCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCA 30352 || ||| | | ||||||||| ||||| |||||||||| ||||| ||| || || Sbjct 2904 GCCAGGCTCAGGTTGGTCACGGCATTACCGTTGGGCAGGTAGCGGACTTCGGGATCCTGG 2845 Query 30353 CCGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 || | | || |||||||||||||||||||| || Sbjct 2844 CCACAGGTACCGACCAGAATGACTTTGTTAACCCC 2810 >seq12606 Length=2136 Score = 125 bits (138), Expect = 2e-24 Identities = 276/411 (67%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 37349 TTCCTGATGTGTGTACTCTTCGTCCGGGTGCTCATCGCTGTTGTAGCTGCGAACGCGAAT 37408 |||||| || ||||||||| ||| ||| || ||| | ||| |||| || | | || Sbjct 1632 TTCCTGCGCTGAGTACTCTTCATCCTTGTGTTCGTCGATATTGAAGCTACGCATCCTTAT 1691 Query 37409 GCCGCCGCCTGGGAGGCGGTACAACACCTTCACTCTGAGTTCTCCGCCGTGGTCGAGAGC 37468 ||||| || || | |||||| | || || | || || || | || | | || Sbjct 1692 TCCGCCACCAGGTATGCGGTAAAGGGTTTTTACGCGCAGCTCCCCATCATGATTTACCGC 1751 Query 37469 ATACATCTTGCCATCGACCACGACAGTGCTTCCCTGGTCTATTCCTACGGTGCTCCCATC 37528 ||||| ||||| || ||| || | ||| | ||||| ||||| ||||| Sbjct 1752 GTACATTTTGCCGTCCTTCACTGTCGTCGAGGACAAGTCAACGCCTACAGTGCTTCCATC 1811 Query 37529 AGGCAAAACTGGCTCCATGCTGTTACCACTTACGGTCACGCATACAGCATTTGATGGGTC 37588 |||| || ||||||||||| || ||| ||||||||||||||||| | || | Sbjct 1812 TGGCAGCACGGGCTCCATGCTATTGCCATGAACGGTCACGCATACAGCCTGGTCAGGTTG 1871 Query 37589 TAC-CTGTTGTTGTCGTAGTGTCAGCTTTCCAAAACGAAGCTTCCTGCTAGAGGACTGCT 37647 || | | |||| || | |||| || || || |||||||| ||| | ||||| | Sbjct 1872 CACGCCCTGGTTG-CGCAAGGTCACTTTGCCGAAGCGAAGCTTTCTGGTGCTGGACTTTT 1930 Query 37648 GTATTGCGGTCCTGCCGCTACCAGCAGAAAGCTCTACTTCCTTGAGAAAAGGCACGTAAA 37707 | | ||||||| || || || |||||||| ||||||||||| || |||| | | Sbjct 1931 GAACGGCGGTCCGACCAGATCCGGCCGAAAGCTCAACTTCCTTGAGGAAGGGCAGCTCCA 1990 Query 37708 CCTCGTCGTTCTCTAGAGGTGTTTCATCGTCCCAAACGTCCATCGGGCCAA 37758 ||||||| | || | ||| || || || ||||| ||||| || || |||| Sbjct 1991 CCTCGTCATCGTCCAAAGGCGTATCGTCATCCCAGACGTCAATAGGCCCAA 2041 >seq30539 Length=7398 Score = 109 bits (120), Expect = 2e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42090 GCCAGGAAGGCCATTGCCGACCGCGAGCGGCGGGAGATCAAGGCGCGTAAGGAGCGGTTG 42149 |||| ||||||| | || || | || ||||| ||| ||| ||||||||| | Sbjct 1047 GCCAAGAAGGCCCTGGCGGATGTTGGTCGCCGGGACATCGAGGTTCGTAAGGAGGCCCTC 988 Query 42150 AAGACGCACAGCGACCACATCAAAGATGCAGAGAAGGCCGTTCGGGACTACCGGCGAACC 42209 ||||| | |||||||| || || ||||||||||| || || || |||||||| ||| Sbjct 987 AAGACCCGATCGGACCACATGAAGGACGCAGAGAAGGCTGTGCGCGATTACCGGCGCACC 928 Query 42210 TACGAACTTTCCATCGGCAGCGGCTGCATAAGCTGCGGCAAGTCTCAGGCCGAGGTACTG 42269 ||||| || ||||||||||||||||| || ||||| |||| |||| | || Sbjct 927 TACGAGCTGAGTATCGGCAGCGGCTGCATCAGTTGCGGTGAGTCGCAGGAATCAATCCTC 868 Query 42270 GCCGAACAAGGCTGGAAGACTGGAGGAGCATTCGA 42304 || |||||||||||| || || ||||| || Sbjct 867 CACGCCCAAGGCTGGAAGGTAGGCGGTGCATTTGA 833 >seq26727 Length=4720 Score = 102 bits (112), Expect = 2e-17 Identities = 152/211 (72%), Gaps = 16/211 (8%) Strand=Plus/Minus Query 37539 GGCTCCATGCTGTTACCACTTACGGTCACGCATACAGCATTTGATGGGTCTACCTGTTGT 37598 || ||||||||||| || | | | |||||| |||||||||| |||||| || ||||| Sbjct 2256 GGTTCCATGCTGTTGCCCTTGATTGGCACGCAGACAGCATTTGCTGGGTCAAC--GTTGT 2199 Query 37599 TGTCGT---AGTGTCAGCTTTCCAAAACGAAGCTTCCTGCTAGAGGACTGCTGTATTG-- 37653 |||| || | | |||||||| || ||||| ||| | |||| || | || Sbjct 2198 -GTCGCTTAAGGCTATGTTTTCCAAACCGCAGCTT--TGC---ATGACTACTTTCTTCAA 2145 Query 37654 ---CGGTCCTGCCGCTACCAGCAGAAAGCTCTACTTCCTTGAGAAAAGGCACGTAAACCT 37710 | || | ||||| || |||||||||||||||||||| || || || | ||| |||| Sbjct 2144 TCACCGTTCGACCGCTCCCTGCAGAAAGCTCTACTTCCTTCAGGAAGGGGATGTATACCT 2085 Query 37711 CGTCGTTCTCTAGAGGTGTTTCATCGTCCCA 37741 |||||| || | || ||||| |||||||| Sbjct 2084 CGTCGTAGTCCAACGGGGTTTCGTCGTCCCA 2054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145585283217872