Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_023575.1
Length=45550
Score E
Sequences producing significant alignments: (Bits) Value
seq12372 154 4e-33
seq7504 140 9e-29
seq12606 125 2e-24
seq30539 109 2e-19
seq26727 102 2e-17
>seq12372
Length=38393
Score = 154 bits (170), Expect = 4e-33
Identities = 236/334 (71%), Gaps = 7/334 (2%)
Strand=Plus/Minus
Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115
||||| | || |||||| |||| |||||||| ||||| || || ||||| || |
Sbjct 38323 CCGCCTAGCAACTGCATGGTGCCGTTGATGTCGACAATGATTTCAGTGGTGTAACGCT-- 38266
Query 30116 TGA--CCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCT 30173
||| ||||||| | || |||| || ||| || || |||| ||| |||
Sbjct 38265 TGATGCCGTCCTTCTCC---CACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGCATTGGG 38209
Query 30174 GACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGT 30233
||| || | || || ||| ||||||| |||| ||| ||||| ||| ||||||||
Sbjct 38208 AACCTTTGCGCAGGTACTCGCCGGCGATCTCGGCCACCTTGCCGAACAACGACACGCGGT 38149
Query 30234 GCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGG 30293
|||| ||||||||||| | ||| ||||| |||||||| |||| |||||||||||
Sbjct 38148 GCCACTCGGTGCGCTCGACCTTCTGCCCGGTTTGCTTGTCGGTCCACTGCTCGCTGGTGG 38089
Query 30294 CGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCAC 30353
| ||| ||| ||| || ||||| |||||||| |||| || || ||| ||||| |
Sbjct 38088 CCAGGCTGAGGTTAGTTACCGCGTTGCCGTTTGGCAGGTAACGGACTTCGGGGTCCTGTC 38029
Query 30354 CGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387
|| | |||||||| || ||||| || |||||
Sbjct 38028 CGCAAGTCCCAACCAGGATCACTTTATTTACGCC 37995
>seq7504
Length=9783
Score = 140 bits (154), Expect = 9e-29
Identities = 235/335 (70%), Gaps = 9/335 (3%)
Strand=Plus/Minus
Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115
||||| | || |||||| |||| ||||| |||||||| || || |||||||| |
Sbjct 3138 CCGCCCAGCAGCTGCATGGTGCCGTTGATGTCAACGATGATTTCAGTGGTGTAGCGCT-- 3081
Query 30116 TGA--CCGTCCTGCGCCTGCCACTTTCGAGTTCTG-AGTGAACCCTCGACGTACAGTTGC 30172
||| ||||| | || |||| || || ||| || || |||| ||| |||
Sbjct 3080 TGATGCCGTCTTTTTCC---CACTCACGGGT-CTGCAGCTTGCCTTCGATGTAGCACTGC 3025
Query 30173 TGACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGG 30232
||| || | || || ||| | ||||| || | ||| ||||| | | ||| |||
Sbjct 3024 GAACCTTTGCGCAGGTACTCGCCGGCAATCTCAGCAACCTTGCCGAACAGCGACACACGG 2965
Query 30233 TGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTG 30292
||||||||||| ||||| | |||||| | ||||||||| |||| |||||||||
Sbjct 2964 TGCCATTCGGTACGCTCGACCTTCTGGCCCGACTGCTTGTCGGTCCATTGCTCGCTGGTT 2905
Query 30293 GCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCA 30352
|| ||| | | ||||||||| ||||| |||||||||| ||||| ||| || ||
Sbjct 2904 GCCAGGCTCAGGTTGGTCACGGCATTACCGTTGGGCAGGTAGCGGACTTCGGGATCCTGG 2845
Query 30353 CCGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387
|| | | || |||||||||||||||||||| ||
Sbjct 2844 CCACAGGTACCGACCAGAATGACTTTGTTAACCCC 2810
>seq12606
Length=2136
Score = 125 bits (138), Expect = 2e-24
Identities = 276/411 (67%), Gaps = 2/411 (0%)
Strand=Plus/Plus
Query 37349 TTCCTGATGTGTGTACTCTTCGTCCGGGTGCTCATCGCTGTTGTAGCTGCGAACGCGAAT 37408
|||||| || ||||||||| ||| ||| || ||| | ||| |||| || | | ||
Sbjct 1632 TTCCTGCGCTGAGTACTCTTCATCCTTGTGTTCGTCGATATTGAAGCTACGCATCCTTAT 1691
Query 37409 GCCGCCGCCTGGGAGGCGGTACAACACCTTCACTCTGAGTTCTCCGCCGTGGTCGAGAGC 37468
||||| || || | |||||| | || || | || || || | || | | ||
Sbjct 1692 TCCGCCACCAGGTATGCGGTAAAGGGTTTTTACGCGCAGCTCCCCATCATGATTTACCGC 1751
Query 37469 ATACATCTTGCCATCGACCACGACAGTGCTTCCCTGGTCTATTCCTACGGTGCTCCCATC 37528
||||| ||||| || ||| || | ||| | ||||| ||||| |||||
Sbjct 1752 GTACATTTTGCCGTCCTTCACTGTCGTCGAGGACAAGTCAACGCCTACAGTGCTTCCATC 1811
Query 37529 AGGCAAAACTGGCTCCATGCTGTTACCACTTACGGTCACGCATACAGCATTTGATGGGTC 37588
|||| || ||||||||||| || ||| ||||||||||||||||| | || |
Sbjct 1812 TGGCAGCACGGGCTCCATGCTATTGCCATGAACGGTCACGCATACAGCCTGGTCAGGTTG 1871
Query 37589 TAC-CTGTTGTTGTCGTAGTGTCAGCTTTCCAAAACGAAGCTTCCTGCTAGAGGACTGCT 37647
|| | | |||| || | |||| || || || |||||||| ||| | ||||| |
Sbjct 1872 CACGCCCTGGTTG-CGCAAGGTCACTTTGCCGAAGCGAAGCTTTCTGGTGCTGGACTTTT 1930
Query 37648 GTATTGCGGTCCTGCCGCTACCAGCAGAAAGCTCTACTTCCTTGAGAAAAGGCACGTAAA 37707
| | ||||||| || || || |||||||| ||||||||||| || |||| | |
Sbjct 1931 GAACGGCGGTCCGACCAGATCCGGCCGAAAGCTCAACTTCCTTGAGGAAGGGCAGCTCCA 1990
Query 37708 CCTCGTCGTTCTCTAGAGGTGTTTCATCGTCCCAAACGTCCATCGGGCCAA 37758
||||||| | || | ||| || || || ||||| ||||| || || ||||
Sbjct 1991 CCTCGTCATCGTCCAAAGGCGTATCGTCATCCCAGACGTCAATAGGCCCAA 2041
>seq30539
Length=7398
Score = 109 bits (120), Expect = 2e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42090 GCCAGGAAGGCCATTGCCGACCGCGAGCGGCGGGAGATCAAGGCGCGTAAGGAGCGGTTG 42149
|||| ||||||| | || || | || ||||| ||| ||| ||||||||| |
Sbjct 1047 GCCAAGAAGGCCCTGGCGGATGTTGGTCGCCGGGACATCGAGGTTCGTAAGGAGGCCCTC 988
Query 42150 AAGACGCACAGCGACCACATCAAAGATGCAGAGAAGGCCGTTCGGGACTACCGGCGAACC 42209
||||| | |||||||| || || ||||||||||| || || || |||||||| |||
Sbjct 987 AAGACCCGATCGGACCACATGAAGGACGCAGAGAAGGCTGTGCGCGATTACCGGCGCACC 928
Query 42210 TACGAACTTTCCATCGGCAGCGGCTGCATAAGCTGCGGCAAGTCTCAGGCCGAGGTACTG 42269
||||| || ||||||||||||||||| || ||||| |||| |||| | ||
Sbjct 927 TACGAGCTGAGTATCGGCAGCGGCTGCATCAGTTGCGGTGAGTCGCAGGAATCAATCCTC 868
Query 42270 GCCGAACAAGGCTGGAAGACTGGAGGAGCATTCGA 42304
|| |||||||||||| || || ||||| ||
Sbjct 867 CACGCCCAAGGCTGGAAGGTAGGCGGTGCATTTGA 833
>seq26727
Length=4720
Score = 102 bits (112), Expect = 2e-17
Identities = 152/211 (72%), Gaps = 16/211 (8%)
Strand=Plus/Minus
Query 37539 GGCTCCATGCTGTTACCACTTACGGTCACGCATACAGCATTTGATGGGTCTACCTGTTGT 37598
|| ||||||||||| || | | | |||||| |||||||||| |||||| || |||||
Sbjct 2256 GGTTCCATGCTGTTGCCCTTGATTGGCACGCAGACAGCATTTGCTGGGTCAAC--GTTGT 2199
Query 37599 TGTCGT---AGTGTCAGCTTTCCAAAACGAAGCTTCCTGCTAGAGGACTGCTGTATTG-- 37653
|||| || | | |||||||| || ||||| ||| | |||| || | ||
Sbjct 2198 -GTCGCTTAAGGCTATGTTTTCCAAACCGCAGCTT--TGC---ATGACTACTTTCTTCAA 2145
Query 37654 ---CGGTCCTGCCGCTACCAGCAGAAAGCTCTACTTCCTTGAGAAAAGGCACGTAAACCT 37710
| || | ||||| || |||||||||||||||||||| || || || | ||| ||||
Sbjct 2144 TCACCGTTCGACCGCTCCCTGCAGAAAGCTCTACTTCCTTCAGGAAGGGGATGTATACCT 2085
Query 37711 CGTCGTTCTCTAGAGGTGTTTCATCGTCCCA 37741
|||||| || | || ||||| ||||||||
Sbjct 2084 CGTCGTAGTCCAACGGGGTTTCGTCGTCCCA 2054
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145585283217872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |