Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_023693.1
Length=148612
Score E
Sequences producing significant alignments: (Bits) Value
seq104 253 2e-62
seq9393 111 1e-19
>seq104
Length=6336
Score = 253 bits (280), Expect = 2e-62
Identities = 827/1267 (65%), Gaps = 61/1267 (5%)
Strand=Plus/Minus
Query 25552 AAAGCCATGAGCGAAACCAGGAGGAATCCAAAATTGTGTTTTATTCTTTTCAGATAAGAG 25611
|||||||||||| ||||| || |||||||| |||||||| | | || |
Sbjct 1774 AAAGCCATGAGCAAAACCTTCCGGTATCCAAAACATGGTTTTATTTTCTGCACTCAGTTC 1715
Query 25612 AACACCTACCCATTCTCCAAATGTTG--GACTACCAACCCTAATATCTACAGCAACATCA 25669
|||||| |||||||| ||| | ||| || | || | ||||||||| ||||||||
Sbjct 1714 AACACCAACCCATTCACCATAAGTTTTTGAGT--CAGGTCGAATATCTACCGCAACATCC 1657
Query 25670 TAAACTTCACCACGAACACAGCGTACCAACTTCCCTTGTGGGTTT--TTC-TTTTGAAAA 25726
|||| ||| | ||| ||||||| || ||||| | | | | |||||| ||
Sbjct 1656 CAAACACGACCTTGTACAACACGTACCAGTTTTCCTTGCGCATAAGGTGCATTTTGATAA 1597
Query 25727 TGAAGCCCACGTAGAAC--TCCTCGGATAGAACGTGAATGGTTATCTTGGACAAAGTTTT 25784
|| | |||||||| || || | || | || ||||||||||||||| ||||| ||
Sbjct 1596 TGCAACCCACGTAACACACTCTTTTGAGACAA--TGAATGGTTATCTTGTACAAAAGTTG 1539
Query 25785 GTTTACCTATGT---ATTGATCATAT--------AAAGC----CTGATTAAAACTTTCTA 25829
| | | || |||| ||| | ||| | ||||||||| ||||| |
Sbjct 1538 GAACAGGCAAGTTTAATTGTTCAAGTGCTTGTGCAAAACGTTGCTGATTAAAGCTTTCCA 1479
Query 25830 AGAAAAAGCCACGTTCATCTCCGTAAACGTCAGGTTGAATGATCAACAAATCTTCGATTT 25889
|| |||| || ||||| || | || | || || | ||||| | |||| ||||
Sbjct 1478 TAAACCAGCCGCGATCATCACCAAATACATTTGGATGTAGAATCAAAAGCCCTTCTATTT 1419
Query 25890 TTGTTGCTTGAATC---ATTTAATTCCCCTTTTATTTTAATTTAAGTAAATACTTACCGT 25946
| || | || || | |||| | || | ||||| ||| | |||| | ||| |
Sbjct 1418 TAGTCGTTTCAACCTGCATTTGACTCTTCCCAGATTTT--TTTCA---AATATTGACCAT 1364
Query 25947 AGTCTGTTTTACTTAAAACCTCTCCAGAACTTTTTACAGAGT----CTAAAGTAATCCAT 26002
| |||||||| | ||| | || || ||||| || | ||| || |||||||
Sbjct 1363 ATTCTGTTTTTTTCAAAGCTTC---AGCACTTTCTAAA-AGTTTCTCTTTGCTAATCCAA 1308
Query 26003 TCATTTTTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATT 26062
| | || ||| |||| || || | ||||| || || | || |||| ||||
Sbjct 1307 CCTTGATTGAAACCAATTTCCTCTAAACATGCGACTTTTAATGACTGACGCTTTTCTACA 1248
Query 26063 GCATGAACAAATTGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCCAGCCAAGTG 26122
| || | ||| ||| |||||| | ||| |||||| || || ||||||| ||| |
Sbjct 1247 GTATAGATAAAGTGACCTGCTTCTAAAAGCGATTCATGCGTGCCCGTATCCAACCATGCA 1188
Query 26123 AAACCTCTTCCTAGTTTACAGA--CACGT--AAAGTCTTTTCTTTCCAGTACATCTCATT 26178
|| |||| |||| | || ||| | || | |||||| || | |||
Sbjct 1187 AACCCTCGCCCTA----AAAGCTCCACATTCAATGAACCATCTTTCAGATATGCATTATT 1132
Query 26179 TATATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTAT 26238
|| || ||||| || | || || | ||||| || || || ||||| || ||
Sbjct 1131 GATGTCAGTAATTTCAAGTTCGCCACGTGCAGATGGCTTCACTTGTTTAGCAAACTCTAC 1072
Query 26239 AACAGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTA-GTTGCtttttggtgtttttg 26297
|||| ||| || || |||||||| || || | || || | || |||| | | || ||
Sbjct 1071 AACACGATTGTCATAGAAGTACAAACCCGTCACGGCATAAGGTGATTTTGGCT-TTAATG 1013
Query 26298 gtttttCTTCAATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTT 26357
||||||||||||| || | ||| | || | |||||||| ||||||||||| | |
Sbjct 1012 GTTTTTCTTCAATGCTGAGAACTTTTCCAGTTGGGTCAAACTCGACAACACCAAAACGCT 953
Query 26358 CAGGATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTT 26417
| || || | || || || ||||| || | | | |||||| || | | ||
Sbjct 952 CTGGGTCTGTCACATGGTAACCAAA--TACT-GTTGCACCATGCTCTCGATTAC------ 902
Query 26418 TAGCAGAATCTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAA 26477
| |||| ||||| | |||||||| |||||| || | | ||| ||||| | | |
Sbjct 901 TCGCAGCTTCTAATTGTTTGCCAAAACTTTGACCATAGTAAATATTGTCACCCAAGATCA 842
Query 26478 GTGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTT 26537
||| ||||| ||||||||| | |||||||| | ||| || | ||| ||||| |
Sbjct 841 AACAAACATTATCTTGACCAATAAACTCTTCACCAATTAAAAATGCCTGTGCCAAACCAT 782
Query 26538 TTGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAA 26597
||| | |||| | ||| || ||||||||| |||||||||||| || |
Sbjct 781 CTGGAGAAGGTTGTACTTTATAAGTAAGTTCAATACCAAATTGAGAACCATCACCGAGCA 722
Query 26598 GATTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAG 26657
| ||| || | | | |||||||||||| | ||| | || | ||| | ||| || |
Sbjct 721 GTTTTTCATATTGGGGTAAATCTTCTGGTGTCGAAATCAATAAGACTTCACGAATACCGG 662
Query 26658 AAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTT 26717
|||||| | ||||| | |||||| |||| ||| ||||||||||||||||| || || |
Sbjct 661 CAAGCATCAATACAGACAATGGATAGTAAACCATTGGTTTATCGTAAATTGGCAAAAGCT 602
Query 26718 GTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAA 26777
|||| || ||||| |||| ||| | | | ||| || |||||| ||||| ||||
Sbjct 601 GTTTCGATACACCTTTGGTAATTGGATGTAAGCGTGTACCTGAACCACCCGCTAAAATAA 542
Query 26778 TACCTTT 26784
|||||||
Sbjct 541 TACCTTT 535
>seq9393
Length=6833
Score = 111 bits (122), Expect = 1e-19
Identities = 222/322 (69%), Gaps = 14/322 (4%)
Strand=Plus/Plus
Query 27114 TGCGTGATCGTCAACGTATAACCAGTCTCTTACTTGAAGACCATTACCATAAACAGGGAT 27173
||| || || || || |||||||||| | | ||| ||||||| ||||| |||||||
Sbjct 484 TGCATGGTCTTCTACAAATAACCAGTCACGAATTTGCTGACCATTGCCATATACAGGGAG 543
Query 27174 TGGTTTA---TGCATTAAGATATTTGTTATCGTTTTAGGTATTAGTTTTTCTGGATGATG 27230
||| || |||| ||| |||| ||| | || || | |||||| || |||
Sbjct 544 TGGCTTGGCTTGCA--AAGC-ATTTAAAATCATAAGCGGAATCAATTTTTCCGGGAAATG 600
Query 27231 ATATGCTCCAAAATTATTTGAACAATTTGTTATAACTGTCGGAATACCATAAGTACGATG 27290
| ||| ||| | ||||||||||| || || | | ||| | |||||||||||| |
Sbjct 601 AAATGGCCCATAGTTATTTGAACAGTTGGTCACCAACACCGGTAAACCATAAGTACGGTT 660
Query 27291 CCACGCTCTTACCAAATGATC---GCTTGCAGCTTTAGATGCAGCATATGGACTACTTGG 27347
||| || | || ||||| || ||| || ||| ||||| |||||| ||||||
Sbjct 661 CCATGCACGGACTAAATGGTCTGAGCTGGC---TTTGCTTGCAGAATATGGTGAACTTGG 717
Query 27348 TTTATAAGGATTCTGTT-CTGTAAACGGATAATCTCCTTCTTCCAGATCACCATACACTT 27406
| ||| | || |||| | ||||| | | | |||| | ||||||||| ||||
Sbjct 718 TGAATACG-ATGTTGTTTCGGTAAATAGGTCGGTTGTACCTTCTAAATCACCATAGACTT 776
Query 27407 CATCTGTTGAAATATGATGGAA 27428
|||| |||||||||||||||||
Sbjct 777 CATCGGTTGAAATATGATGGAA 798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475247876326560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |