Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq104 253 2e-62 seq9393 111 1e-19 >seq104 Length=6336 Score = 253 bits (280), Expect = 2e-62 Identities = 827/1267 (65%), Gaps = 61/1267 (5%) Strand=Plus/Minus Query 25552 AAAGCCATGAGCGAAACCAGGAGGAATCCAAAATTGTGTTTTATTCTTTTCAGATAAGAG 25611 |||||||||||| ||||| || |||||||| |||||||| | | || | Sbjct 1774 AAAGCCATGAGCAAAACCTTCCGGTATCCAAAACATGGTTTTATTTTCTGCACTCAGTTC 1715 Query 25612 AACACCTACCCATTCTCCAAATGTTG--GACTACCAACCCTAATATCTACAGCAACATCA 25669 |||||| |||||||| ||| | ||| || | || | ||||||||| |||||||| Sbjct 1714 AACACCAACCCATTCACCATAAGTTTTTGAGT--CAGGTCGAATATCTACCGCAACATCC 1657 Query 25670 TAAACTTCACCACGAACACAGCGTACCAACTTCCCTTGTGGGTTT--TTC-TTTTGAAAA 25726 |||| ||| | ||| ||||||| || ||||| | | | | |||||| || Sbjct 1656 CAAACACGACCTTGTACAACACGTACCAGTTTTCCTTGCGCATAAGGTGCATTTTGATAA 1597 Query 25727 TGAAGCCCACGTAGAAC--TCCTCGGATAGAACGTGAATGGTTATCTTGGACAAAGTTTT 25784 || | |||||||| || || | || | || ||||||||||||||| ||||| || Sbjct 1596 TGCAACCCACGTAACACACTCTTTTGAGACAA--TGAATGGTTATCTTGTACAAAAGTTG 1539 Query 25785 GTTTACCTATGT---ATTGATCATAT--------AAAGC----CTGATTAAAACTTTCTA 25829 | | | || |||| ||| | ||| | ||||||||| ||||| | Sbjct 1538 GAACAGGCAAGTTTAATTGTTCAAGTGCTTGTGCAAAACGTTGCTGATTAAAGCTTTCCA 1479 Query 25830 AGAAAAAGCCACGTTCATCTCCGTAAACGTCAGGTTGAATGATCAACAAATCTTCGATTT 25889 || |||| || ||||| || | || | || || | ||||| | |||| |||| Sbjct 1478 TAAACCAGCCGCGATCATCACCAAATACATTTGGATGTAGAATCAAAAGCCCTTCTATTT 1419 Query 25890 TTGTTGCTTGAATC---ATTTAATTCCCCTTTTATTTTAATTTAAGTAAATACTTACCGT 25946 | || | || || | |||| | || | ||||| ||| | |||| | ||| | Sbjct 1418 TAGTCGTTTCAACCTGCATTTGACTCTTCCCAGATTTT--TTTCA---AATATTGACCAT 1364 Query 25947 AGTCTGTTTTACTTAAAACCTCTCCAGAACTTTTTACAGAGT----CTAAAGTAATCCAT 26002 | |||||||| | ||| | || || ||||| || | ||| || ||||||| Sbjct 1363 ATTCTGTTTTTTTCAAAGCTTC---AGCACTTTCTAAA-AGTTTCTCTTTGCTAATCCAA 1308 Query 26003 TCATTTTTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATT 26062 | | || ||| |||| || || | ||||| || || | || |||| |||| Sbjct 1307 CCTTGATTGAAACCAATTTCCTCTAAACATGCGACTTTTAATGACTGACGCTTTTCTACA 1248 Query 26063 GCATGAACAAATTGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCCAGCCAAGTG 26122 | || | ||| ||| |||||| | ||| |||||| || || ||||||| ||| | Sbjct 1247 GTATAGATAAAGTGACCTGCTTCTAAAAGCGATTCATGCGTGCCCGTATCCAACCATGCA 1188 Query 26123 AAACCTCTTCCTAGTTTACAGA--CACGT--AAAGTCTTTTCTTTCCAGTACATCTCATT 26178 || |||| |||| | || ||| | || | |||||| || | ||| Sbjct 1187 AACCCTCGCCCTA----AAAGCTCCACATTCAATGAACCATCTTTCAGATATGCATTATT 1132 Query 26179 TATATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTAT 26238 || || ||||| || | || || | ||||| || || || ||||| || || Sbjct 1131 GATGTCAGTAATTTCAAGTTCGCCACGTGCAGATGGCTTCACTTGTTTAGCAAACTCTAC 1072 Query 26239 AACAGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTA-GTTGCtttttggtgtttttg 26297 |||| ||| || || |||||||| || || | || || | || |||| | | || || Sbjct 1071 AACACGATTGTCATAGAAGTACAAACCCGTCACGGCATAAGGTGATTTTGGCT-TTAATG 1013 Query 26298 gtttttCTTCAATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTT 26357 ||||||||||||| || | ||| | || | |||||||| ||||||||||| | | Sbjct 1012 GTTTTTCTTCAATGCTGAGAACTTTTCCAGTTGGGTCAAACTCGACAACACCAAAACGCT 953 Query 26358 CAGGATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTT 26417 | || || | || || || ||||| || | | | |||||| || | | || Sbjct 952 CTGGGTCTGTCACATGGTAACCAAA--TACT-GTTGCACCATGCTCTCGATTAC------ 902 Query 26418 TAGCAGAATCTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAA 26477 | |||| ||||| | |||||||| |||||| || | | ||| ||||| | | | Sbjct 901 TCGCAGCTTCTAATTGTTTGCCAAAACTTTGACCATAGTAAATATTGTCACCCAAGATCA 842 Query 26478 GTGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTT 26537 ||| ||||| ||||||||| | |||||||| | ||| || | ||| ||||| | Sbjct 841 AACAAACATTATCTTGACCAATAAACTCTTCACCAATTAAAAATGCCTGTGCCAAACCAT 782 Query 26538 TTGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAA 26597 ||| | |||| | ||| || ||||||||| |||||||||||| || | Sbjct 781 CTGGAGAAGGTTGTACTTTATAAGTAAGTTCAATACCAAATTGAGAACCATCACCGAGCA 722 Query 26598 GATTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAG 26657 | ||| || | | | |||||||||||| | ||| | || | ||| | ||| || | Sbjct 721 GTTTTTCATATTGGGGTAAATCTTCTGGTGTCGAAATCAATAAGACTTCACGAATACCGG 662 Query 26658 AAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTT 26717 |||||| | ||||| | |||||| |||| ||| ||||||||||||||||| || || | Sbjct 661 CAAGCATCAATACAGACAATGGATAGTAAACCATTGGTTTATCGTAAATTGGCAAAAGCT 602 Query 26718 GTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAA 26777 |||| || ||||| |||| ||| | | | ||| || |||||| ||||| |||| Sbjct 601 GTTTCGATACACCTTTGGTAATTGGATGTAAGCGTGTACCTGAACCACCCGCTAAAATAA 542 Query 26778 TACCTTT 26784 ||||||| Sbjct 541 TACCTTT 535 >seq9393 Length=6833 Score = 111 bits (122), Expect = 1e-19 Identities = 222/322 (69%), Gaps = 14/322 (4%) Strand=Plus/Plus Query 27114 TGCGTGATCGTCAACGTATAACCAGTCTCTTACTTGAAGACCATTACCATAAACAGGGAT 27173 ||| || || || || |||||||||| | | ||| ||||||| ||||| ||||||| Sbjct 484 TGCATGGTCTTCTACAAATAACCAGTCACGAATTTGCTGACCATTGCCATATACAGGGAG 543 Query 27174 TGGTTTA---TGCATTAAGATATTTGTTATCGTTTTAGGTATTAGTTTTTCTGGATGATG 27230 ||| || |||| ||| |||| ||| | || || | |||||| || ||| Sbjct 544 TGGCTTGGCTTGCA--AAGC-ATTTAAAATCATAAGCGGAATCAATTTTTCCGGGAAATG 600 Query 27231 ATATGCTCCAAAATTATTTGAACAATTTGTTATAACTGTCGGAATACCATAAGTACGATG 27290 | ||| ||| | ||||||||||| || || | | ||| | |||||||||||| | Sbjct 601 AAATGGCCCATAGTTATTTGAACAGTTGGTCACCAACACCGGTAAACCATAAGTACGGTT 660 Query 27291 CCACGCTCTTACCAAATGATC---GCTTGCAGCTTTAGATGCAGCATATGGACTACTTGG 27347 ||| || | || ||||| || ||| || ||| ||||| |||||| |||||| Sbjct 661 CCATGCACGGACTAAATGGTCTGAGCTGGC---TTTGCTTGCAGAATATGGTGAACTTGG 717 Query 27348 TTTATAAGGATTCTGTT-CTGTAAACGGATAATCTCCTTCTTCCAGATCACCATACACTT 27406 | ||| | || |||| | ||||| | | | |||| | ||||||||| |||| Sbjct 718 TGAATACG-ATGTTGTTTCGGTAAATAGGTCGGTTGTACCTTCTAAATCACCATAGACTT 776 Query 27407 CATCTGTTGAAATATGATGGAA 27428 |||| ||||||||||||||||| Sbjct 777 CATCGGTTGAAATATGATGGAA 798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475247876326560