Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq30076 93.3 4e-14 seq17968 82.4 7e-11 >seq30076 Length=4501 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 150001 TAGCTCAGTTGGTAGAGCGCTCGACCGATAATCGAGAGGTCACTGGTTCAAGTCCAGTAT 150060 ||||||||| |||||||| ||| | ||||| |||| ||||||| ||||||| Sbjct 3591 TAGCTCAGTCGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCGAGTCCAGGTC 3650 Query 150061 CCCCAACCATACACGGTGTGTAGCTCAGTTTGGTAGAGCGATTGCTTTGGGAGCATTAGG 150120 | | ||| | ||| ||||||| |||| ||||| ||| ||||||||||||| | | Sbjct 3651 GCGGAGCCAATCTCGGGGTGTAGCGCAGTCCGGTAGCGCGCCTGCTTTGGGAGCAGGATG 3710 Query 150121 TCCGAGGTTCGAATCCTCGTACACCGACCACATTCTTGCGAGGTAGTTCAG-CGGTAGAA 150179 || | |||||||||| | || ||||||| ||| | | ||| |||| |||||| Sbjct 3711 TCAGGAGTTCGAATCCCCTCACCCCGACCATTTTCCGGGTCGTTAGCTCAGTTGGTAGAG 3770 Query 150180 CAG 150182 ||| Sbjct 3771 CAG 3773 >seq17968 Length=506 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 148132 TTGCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGA 148191 |||| || |||||||| ||||||||||||||| |||||||||| ||||| ||||||||| Sbjct 253 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGA 194 Query 148192 ACCCTGCATCCAGCACCA 148209 |||| || |||||| Sbjct 193 TTCCTGGTGCCGGCACCA 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485842207468320