Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_023734.1 Length=35725 Score E Sequences producing significant alignments: (Bits) Value seq3336 145 2e-30 >seq3336 Length=1417 Score = 145 bits (160), Expect = 2e-30 Identities = 298/438 (68%), Gaps = 9/438 (2%) Strand=Plus/Minus Query 15690 GCTTTGGATCGGTGGAATCCAGACATTAAAGCGTCAGACGATGACTCTGAAAACGTGATC 15749 || ||||| |||||||||||| || || ||| || | || ||| ||| ||| Sbjct 535 GCCTTGGAGCGGTGGAATCCATCGATCAAGGCGGCAAGCACGGA---TGACAACTCCATC 479 Query 15750 AACATCTTAGAGGTTATTGGTTACGACTGGTGGACCGATGGCGGCATCACTGGCAAGTCT 15809 | || | || ||||| | || |||||||| | || ||| | |||| ||| Sbjct 478 ACGATTTACGACCCGATTGGGTTTGATTGGTGGACGGGTGAGGGCGTAACTGCAAAGCGG 419 Query 15810 ATCAGCGCTCAACTCAAAAGATTTAACGGTG-CAGATAT-TGTC-GTTAATATTAACTCT 15866 ||||||||| || ||| || ||||| ||| || || | || || || ||| Sbjct 418 ATCAGCGCTGCGCTTC---GATCTATCGGTGACAGTGATGTGACCGTGAAGATCAACAGC 362 Query 15867 CCTGGTGGTGATGTATTCGAAGGTTTGGCAATCTACAACATGCTGCGCGAATATTCTGGC 15926 || || || || || || ||||| |||| ||||||||| |||||||||| | ||| Sbjct 361 CCAGGCGGCGACGTGTTTGAAGGGCTGGCCATCTACAACCTGCTGCGCGAGCACAAGGGC 302 Query 15927 CATGTGACGGTCAGAGTGCTTGGTATGGCTGCGAGCGCCGCATCATTTATTGCGATGGCT 15986 | |||||||| | | || || | || || ||||| || || || || ||||| Sbjct 301 AAAGTGACGGTGCAAATCCTCGGCCTCGCCGCCTCGGCCGCGTCGTTCATCGCTATGGCG 242 Query 15987 GCTGATGAAGTGAAGATTGCGCGCGCAGGCTTCTTTATGATTCACAATGCTTGGACCGGC 16046 ||||||||| | |||| |||||||| ||||| | ||||||||||| ||||| Sbjct 241 GCTGATGAAATCCAGATCGCGCGCGCCGGCTTTCTGATGATTCACAACAGCTGGACGATG 182 Query 16047 GTTGGCGGTAACCGTAATGATATGCGTGAAGTGGCTGACTTCTTGGAGCAAATCGATGCA 16106 | | |||| |||| || || || || || || || |||||| | ||||| || || | | Sbjct 181 GCCGCCGGTGACCGCAACGACATTCGAGAGGTCGCCGACTTCCTCGAGCAGATTGACGGA 122 Query 16107 ACCATCGCTGATATCTAC 16124 || |||||||||||||| Sbjct 121 ACACTCGCTGATATCTAC 104 Score = 129 bits (142), Expect = 1e-25 Identities = 322/486 (66%), Gaps = 10/486 (2%) Strand=Plus/Minus Query 15119 AACGCTGGCAAGACGATGGTACTTGAGCATGGCATGAAGTATAACGGCGTGACCATGAAC 15178 ||||| ||||||| ||||| ||| ||| ||||||| | || | || ||||| Sbjct 1296 AACGCCGGCAAGATCATGGTGGCCGAGGCTGGGTTGAAGTACCAAGGGATCACGATGAAT 1237 Query 15179 CCAGAAGCGGCGCAAATGCTTGAGACGCGATCCTTTGAGATTGAGGAAATCTGTCGTTGG 15238 || ||||| |||||||||||||| || | || || ||||| || || || || ||| Sbjct 1236 CCCGAAGCCTCGCAAATGCTTGAGTCGAGGTCGTTCAGCATTGAAGAGATGTGCCGGTGG 1177 Query 15239 TTTCGCGTATCGCCAATTATGATTGGGCACTTCGATAAGCAAAGCTCATGGGCCGCCTCT 15298 || || || |||| | ||| | || ||| | |||||||| | |||||| || Sbjct 1176 TTCCGGGTGCCGCCCTTCATGGTCGGTCACATGGATAAGCAGTCCAGTTGGGCCAGTTCG 1117 Query 15299 GCTGAAGCGCAAGACTTACACTTTTTGAAATACACATTTAGACCGCTGCTAGTCAATATT 15358 | |||||||| || | ||||| ||| ||| || | |||||||| || || ||| Sbjct 1116 GTGGAAGCGCAGAACCTGCACTTCCTGACCAACAGTTTGCGCCCGCTGCTGGTGAACATT 1057 Query 15359 GAGCAAGAGATTTTACGCTGTCTTATCGGAAAAATTGATAGCGACAAGTATTACGTTGAG 15418 ||||| ||||| || || || ||||| | ||| ||| ||| | || |||| Sbjct 1056 GAGCAGGAGATCACCCGATGCCTGATCGGTGAGGCTGACGCTGACGAGTTCTTCGCTGAG 997 Query 15419 TTCAATGTCGAAGGCTTACTACGTGCAGACA-----GTAAAACGCGCTCTGAGTACTATT 15473 ||| ||| |||||| | || || || |||| | |||| ||| |||| | Sbjct 996 TTCGCTGTTGAAGGCCTGCTGCGCGCCGACAGCGCCGGTCGTGGCGC-CTG-GTACAA-- 941 Query 15474 CGTCTGGCCTGAATAACGGCTGGATAAATCGTGACGAAGTCCGGTCTAAAGAGAATATGC 15533 ||| ||| | ||||||||||| || |||| || ||| | || || ||| Sbjct 940 -CACTGCTCTGCAAAACGGCTGGATGTGCCGCAACGAGGTGCGGCGTCTGGAAAACATGG 882 Query 15534 CGCCAATTGACGGCGGTGATAAGTACACAATTCAATCAGCACTTATCCCGCTTGATAAGG 15593 | ||||| ||||| |||| || ||| |||| || || ||| | |||||||| || Sbjct 881 CTCCAATCCCTGGCGGCGATACGTTCACTGTTCAGTCGGCGCTTGTACCGCTTGACCAGC 822 Query 15594 TGGGCA 15599 | |||| Sbjct 821 TCGGCA 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114156749916422