Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq4839 279 4e-70 >seq4839 Length=4080137 Score = 279 bits (308), Expect = 4e-70 Identities = 505/728 (69%), Gaps = 73/728 (10%) Strand=Plus/Minus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCT-CTTGAGAGTTAAGGAAGGC 1129 ||||||| ||||||||||||||||||| |||||| |||| |||| | | | |||||| Sbjct 2688655 CCACAGCCCTAGCTTCTGGTCTGAAAA-GAGTAGCCTTCTTCTTGGG-GCAATAGAAGGC 2688598 Query 1130 ATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189 ||||||||||| ||||| ||||| |||||| | |||||||||| || || | || ||| Sbjct 2688597 GTTTTAAAGAAATGGCTTGGAAAAGAAATCTCGAGGGCACTTACGTAGTCATTCAAGAGT 2688538 Query 1190 TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGGTAGTGGA 1249 || ||| ||| || ||| ||| |||||| |||| |||| | || || ||| | Sbjct 2688537 TTCTCAAACGAGGACCGTAATTCCTTGATTATAGCTTGTTGTTTATCTGGTCCTAGCACA 2688478 Query 1250 TGG----CC--GTGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGC 1303 | | || |||||||| ||||||||||| |||||||||| |||||||||||||| | Sbjct 2688477 TAGGGTACCATATGGGAGGACAGCAAGGCTCCCGAACAGCAGAACAGGAACAGGGCAAAC 2688418 Query 1304 CCTGAAGATTTTGTAAAAATAGAGTAATGC---------------CCACACACCCCCACC 1348 | | |||| || | ||| | || |||| ||||||||||| || Sbjct 2688417 CTGGCAGATCCTGGAGAAAGAAGGTGATGCCGGGAGGAGCCAAGGCCACACACCCCAGCC 2688358 Query 1349 TGCCCC-ATAC---CTTAACCTGCCCAAG-CTTTCACCACCGAAGCTGTGCCGGACTGAG 1403 |||| || ||| | | || |||| |||| || ||| || | ||||| Sbjct 2688357 CCCCCCGCCACCGGCTTCAACCGCTCAAGCCTTTGTCC-----AGCAGT----GGCTGAG 2688307 Query 1404 CCCCATCCAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGC 1463 |||| ||||||||| |||| ||||| | || || | || | | || || | | ||| Sbjct 2688306 CCCC-TCCAGTCTTCCTCTCTGTCTGGTGAGACCCAACTGTGC---CCCGCGGCCACGGC 2688251 Query 1464 TGTAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTT 1523 ||| | |||||||| |||| || || || |||||||||||| || |||| Sbjct 2688250 ------ACCCCGTGGTACCTGAGTGGGAGACCATGGCGGGAGAGAGCGAG---GCTGCTT 2688200 Query 1524 TGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGG 1583 ||||| ||| || ||| |||||||||||| | | || ||| | |||||||||| Sbjct 2688199 CAGCAACCGCTCCTGGAGCCAGATGTGCTCGCCGTGGTCTTCAGGAGC--TATATAAAGG 2688142 Query 1584 GCTAGTTGTAAGGAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT-------- 1635 || | | | |||| || |||| || || |||| || ||| |||||||| Sbjct 2688141 GCCAATGGCGAGGAAGATCACT----GTCCCACCCATGGCAAAATCATTACTCAGCTTTT 2688086 Query 1636 ---CAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGG 1691 ||||||||| ||||||| | ||||| | | ||| | |||||| |||| ||||| Sbjct 2688085 TCCCAGAAAACACTTTCAAAAGTCTGCCACCCAAGGCTGGGTGAAAGCAGGGCTGGAAGG 2688026 Query 1692 AAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGGG 1748 ||| ||| |||||||| ||| |||||||| || ||| || | || ||||||| | || Sbjct 2688025 AAATGCTGAGGTTACCCTCAAGGTGGGCAGACGCCTGATTCAGTACAGATACACA-CAGG 2687967 Query 1749 CACCCACA 1756 ||| |||| Sbjct 2687966 CACACACA 2687959 Score = 212 bits (234), Expect = 5e-50 Identities = 344/495 (69%), Gaps = 29/495 (6%) Strand=Plus/Minus Query 287 AACAACTTACAGCAGAATTCTCGTACACAGAGGGCACTAATCTT--------AAGGCTCT 338 || |||| |||||||||||||| || || | |||| | || ||| || Sbjct 2690307 AATAACTCACAGCAGAATTCTCACACTTAGCTGTCACTCTTTTTTTTTTTTTAAGCCTTC 2690248 Query 339 TTGCATTCCTGCCATTC-AAAAGGAACAGGGTCAACCACATGGTCTTCAGTGACCTTCCA 397 |||||| ||||||||| ||||||| |||| ||||||| |||| || | |||||| | Sbjct 2690247 ATGCATTTCTGCCATTCCAAAAGGACCAGGTTCAACCAGATGGCTTTAAATGACCTACTG 2690188 Query 398 GGCTTCAGTGCCCACTAATTT--------CAGGCACTTTGAAAACATTTCTAAAACACAC 449 |||| ||||| || | |||| |||||||| ||||||| ||| ||||| | || Sbjct 2690187 GGCTCCAGTGTTCAATGATTTAAACAGATCAGGCACTCTGAAAACTTTTTTAAAATAGAC 2690128 Query 450 TGTATGAACACttttttttGATAGCTGTCTGTAGGCATAGAAA------TGTCTGGTGCG 503 ||||| ||| || | |||| |||||||||| ||||| | |||||| | Sbjct 2690127 ACGATGAAGCTTTTACATTTAAAGCTATCTGTAGGCACAGAAACTTTTGTTTCTGGTTCA 2690068 Query 504 CGTTGCAATTCAAGTTTTTTGAGATGGTCCATGACATCAGTAAAACTATTTGTGTCATTA 563 ||| ||||| ||||| |||||||||| |||| || || | | ||| | Sbjct 2690067 CGTCAAAATTCGAGTTTACTGAGATGGTCTATGATGGCAACAATTTGAGCTTTGTTACCG 2690008 Query 564 AAAAATGATTTGATGGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGATGTTGTGTGGT 623 ||||||| |||||| ||||| ||||||||| | ||||||| |||| |||||||| ||| Sbjct 2690007 AAAAATGGTTTGATCGCTCTGCAATAAGGCAAGGTGGCTGAGCTGTCGATGTTGTATGGC 2689948 Query 624 GGCTGGGGGCTCACAGAAAAGCACTGCATGCGGCACGTGCATGATTTTACTAATCCCTTA 683 | |||||| ||| || || || || | || || || |||| | ||| | Sbjct 2689947 AGTTGGGGGTTCAGAGCGAAATACGGCGTCTGGTACTGGCTGGATTCCGGCACTCCGCT- 2689889 Query 684 TTCTCTTTCTGCTTCTGTGGAAGGAGA---GGAAATGGGTGAGCATTAGTGTTGTAAAGC 740 ||||| ||||| ||||| |||||| |||| ||||||||||||||| ||| ||| | Sbjct 2689888 --CTCTTCCTGCTGCTGTGCAAGGAGGAGGGGAAGTGGGTGAGCATTAGTTTTGCAAAAC 2689831 Query 741 AGTCAGAAACCCTGA 755 || |||||| || || Sbjct 2689830 AGCCAGAAATCCCGA 2689816 Score = 105 bits (116), Expect = 6e-18 Identities = 92/114 (81%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 166 CCACACACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTT 225 |||||||||| || |||||||| ||| ||||||||||| ||| ||||||||||| ||| Sbjct 2690609 CCACACACAAAATGCAAAACAGAGTATGAGAAAAATTCAATATCGTTTATTAAATAGTTT 2690550 Query 226 TCAAGGGCTTCTTTAAGAAGCATTAACAATCTAACAACATTTTATAAATAACAA 279 |||||||| || ||| |||||||||||||| | || | ||||||| ||| Sbjct 2690549 CCAAGGGCTCCTCCAAGGAGCATTAACAATCTCA----ATATGATAAATATCAA 2690500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438391631334000