Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq4839 279 4e-70
>seq4839
Length=4080137
Score = 279 bits (308), Expect = 4e-70
Identities = 505/728 (69%), Gaps = 73/728 (10%)
Strand=Plus/Minus
Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCT-CTTGAGAGTTAAGGAAGGC 1129
||||||| ||||||||||||||||||| |||||| |||| |||| | | | ||||||
Sbjct 2688655 CCACAGCCCTAGCTTCTGGTCTGAAAA-GAGTAGCCTTCTTCTTGGG-GCAATAGAAGGC 2688598
Query 1130 ATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189
||||||||||| ||||| ||||| |||||| | |||||||||| || || | || |||
Sbjct 2688597 GTTTTAAAGAAATGGCTTGGAAAAGAAATCTCGAGGGCACTTACGTAGTCATTCAAGAGT 2688538
Query 1190 TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGGTAGTGGA 1249
|| ||| ||| || ||| ||| |||||| |||| |||| | || || ||| |
Sbjct 2688537 TTCTCAAACGAGGACCGTAATTCCTTGATTATAGCTTGTTGTTTATCTGGTCCTAGCACA 2688478
Query 1250 TGG----CC--GTGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGC 1303
| | || |||||||| ||||||||||| |||||||||| |||||||||||||| |
Sbjct 2688477 TAGGGTACCATATGGGAGGACAGCAAGGCTCCCGAACAGCAGAACAGGAACAGGGCAAAC 2688418
Query 1304 CCTGAAGATTTTGTAAAAATAGAGTAATGC---------------CCACACACCCCCACC 1348
| | |||| || | ||| | || |||| ||||||||||| ||
Sbjct 2688417 CTGGCAGATCCTGGAGAAAGAAGGTGATGCCGGGAGGAGCCAAGGCCACACACCCCAGCC 2688358
Query 1349 TGCCCC-ATAC---CTTAACCTGCCCAAG-CTTTCACCACCGAAGCTGTGCCGGACTGAG 1403
|||| || ||| | | || |||| |||| || ||| || | |||||
Sbjct 2688357 CCCCCCGCCACCGGCTTCAACCGCTCAAGCCTTTGTCC-----AGCAGT----GGCTGAG 2688307
Query 1404 CCCCATCCAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGC 1463
|||| ||||||||| |||| ||||| | || || | || | | || || | | |||
Sbjct 2688306 CCCC-TCCAGTCTTCCTCTCTGTCTGGTGAGACCCAACTGTGC---CCCGCGGCCACGGC 2688251
Query 1464 TGTAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTT 1523
||| | |||||||| |||| || || || |||||||||||| || ||||
Sbjct 2688250 ------ACCCCGTGGTACCTGAGTGGGAGACCATGGCGGGAGAGAGCGAG---GCTGCTT 2688200
Query 1524 TGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGG 1583
||||| ||| || ||| |||||||||||| | | || ||| | ||||||||||
Sbjct 2688199 CAGCAACCGCTCCTGGAGCCAGATGTGCTCGCCGTGGTCTTCAGGAGC--TATATAAAGG 2688142
Query 1584 GCTAGTTGTAAGGAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT-------- 1635
|| | | | |||| || |||| || || |||| || ||| ||||||||
Sbjct 2688141 GCCAATGGCGAGGAAGATCACT----GTCCCACCCATGGCAAAATCATTACTCAGCTTTT 2688086
Query 1636 ---CAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGG 1691
||||||||| ||||||| | ||||| | | ||| | |||||| |||| |||||
Sbjct 2688085 TCCCAGAAAACACTTTCAAAAGTCTGCCACCCAAGGCTGGGTGAAAGCAGGGCTGGAAGG 2688026
Query 1692 AAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGGG 1748
||| ||| |||||||| ||| |||||||| || ||| || | || ||||||| | ||
Sbjct 2688025 AAATGCTGAGGTTACCCTCAAGGTGGGCAGACGCCTGATTCAGTACAGATACACA-CAGG 2687967
Query 1749 CACCCACA 1756
||| ||||
Sbjct 2687966 CACACACA 2687959
Score = 212 bits (234), Expect = 5e-50
Identities = 344/495 (69%), Gaps = 29/495 (6%)
Strand=Plus/Minus
Query 287 AACAACTTACAGCAGAATTCTCGTACACAGAGGGCACTAATCTT--------AAGGCTCT 338
|| |||| |||||||||||||| || || | |||| | || ||| ||
Sbjct 2690307 AATAACTCACAGCAGAATTCTCACACTTAGCTGTCACTCTTTTTTTTTTTTTAAGCCTTC 2690248
Query 339 TTGCATTCCTGCCATTC-AAAAGGAACAGGGTCAACCACATGGTCTTCAGTGACCTTCCA 397
|||||| ||||||||| ||||||| |||| ||||||| |||| || | |||||| |
Sbjct 2690247 ATGCATTTCTGCCATTCCAAAAGGACCAGGTTCAACCAGATGGCTTTAAATGACCTACTG 2690188
Query 398 GGCTTCAGTGCCCACTAATTT--------CAGGCACTTTGAAAACATTTCTAAAACACAC 449
|||| ||||| || | |||| |||||||| ||||||| ||| ||||| | ||
Sbjct 2690187 GGCTCCAGTGTTCAATGATTTAAACAGATCAGGCACTCTGAAAACTTTTTTAAAATAGAC 2690128
Query 450 TGTATGAACACttttttttGATAGCTGTCTGTAGGCATAGAAA------TGTCTGGTGCG 503
||||| ||| || | |||| |||||||||| ||||| | |||||| |
Sbjct 2690127 ACGATGAAGCTTTTACATTTAAAGCTATCTGTAGGCACAGAAACTTTTGTTTCTGGTTCA 2690068
Query 504 CGTTGCAATTCAAGTTTTTTGAGATGGTCCATGACATCAGTAAAACTATTTGTGTCATTA 563
||| ||||| ||||| |||||||||| |||| || || | | ||| |
Sbjct 2690067 CGTCAAAATTCGAGTTTACTGAGATGGTCTATGATGGCAACAATTTGAGCTTTGTTACCG 2690008
Query 564 AAAAATGATTTGATGGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGATGTTGTGTGGT 623
||||||| |||||| ||||| ||||||||| | ||||||| |||| |||||||| |||
Sbjct 2690007 AAAAATGGTTTGATCGCTCTGCAATAAGGCAAGGTGGCTGAGCTGTCGATGTTGTATGGC 2689948
Query 624 GGCTGGGGGCTCACAGAAAAGCACTGCATGCGGCACGTGCATGATTTTACTAATCCCTTA 683
| |||||| ||| || || || || | || || || |||| | ||| |
Sbjct 2689947 AGTTGGGGGTTCAGAGCGAAATACGGCGTCTGGTACTGGCTGGATTCCGGCACTCCGCT- 2689889
Query 684 TTCTCTTTCTGCTTCTGTGGAAGGAGA---GGAAATGGGTGAGCATTAGTGTTGTAAAGC 740
||||| ||||| ||||| |||||| |||| ||||||||||||||| ||| ||| |
Sbjct 2689888 --CTCTTCCTGCTGCTGTGCAAGGAGGAGGGGAAGTGGGTGAGCATTAGTTTTGCAAAAC 2689831
Query 741 AGTCAGAAACCCTGA 755
|| |||||| || ||
Sbjct 2689830 AGCCAGAAATCCCGA 2689816
Score = 105 bits (116), Expect = 6e-18
Identities = 92/114 (81%), Gaps = 4/114 (4%)
Strand=Plus/Minus
Query 166 CCACACACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTT 225
|||||||||| || |||||||| ||| ||||||||||| ||| ||||||||||| |||
Sbjct 2690609 CCACACACAAAATGCAAAACAGAGTATGAGAAAAATTCAATATCGTTTATTAAATAGTTT 2690550
Query 226 TCAAGGGCTTCTTTAAGAAGCATTAACAATCTAACAACATTTTATAAATAACAA 279
|||||||| || ||| |||||||||||||| | || | ||||||| |||
Sbjct 2690549 CCAAGGGCTCCTCCAAGGAGCATTAACAATCTCA----ATATGATAAATATCAA 2690500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438391631334000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |