Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq25106 107 3e-18 seq5292 107 3e-18 seq16393 105 9e-18 seq10995 105 9e-18 seq4839 105 9e-18 seq16981 104 3e-17 seq9903 95.1 2e-14 >seq25106 Length=2841466 Score = 107 bits (118), Expect = 3e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1550999 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1551058 Query 8718 CCCGACGAGGAGCAGAG 8734 ||||||| |||| |||| Sbjct 1551059 CCCGACGGGGAGAAGAG 1551075 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1550999 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1551058 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1551059 CCCGACGGGGAG 1551070 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 1551070 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1551011 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1551010 TACTAACGAGGA 1550999 >seq5292 Length=1841388 Score = 107 bits (118), Expect = 3e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712 |||| ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 1751585 CTTACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 1751526 Query 8713 GATTCCCCGACGAGGAG 8729 |||||||||||| |||| Sbjct 1751525 GATTCCCCGACGGGGAG 1751509 Score = 100 bits (110), Expect = 4e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 |||| | ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||| Sbjct 1751588 TAACTTACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 1751529 Query 11781 TTCGATTCCCCGACGAGGAG 11800 ||||||||||||||| |||| Sbjct 1751528 TTCGATTCCCCGACGGGGAG 1751509 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1751509 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1751568 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1751569 TACTAACGAGGA 1751580 >seq16393 Length=3353470 Score = 105 bits (116), Expect = 9e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 1449851 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1449792 Query 8717 CCCCGACGAGGAGCAG 8732 |||||||| |||| || Sbjct 1449791 CCCCGACGGGGAGAAG 1449776 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1449850 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1449791 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1449790 CCCGACGGGGAG 1449779 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1449779 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1449838 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1449839 TACTAACGAGGA 1449850 >seq10995 Length=612262 Score = 105 bits (116), Expect = 9e-18 Identities = 73/82 (89%), Gaps = 3/82 (4%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 448037 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 447978 Query 8717 CCCCGACGAGGAG---CAGAGG 8735 |||||||| |||| |||||| Sbjct 447977 CCCCGACGGGGAGGCACAGAGG 447956 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 448036 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 447977 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 447976 CCCGACGGGGAGG 447964 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 447965 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 448024 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 448025 TACTAACGAGGA 448036 >seq4839 Length=4080137 Score = 105 bits (116), Expect = 9e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 518159 AGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 518218 Query 11787 TCCCCGACGAGGAGG 11801 ||||||||| ||||| Sbjct 518219 TCCCCGACGGGGAGG 518233 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 515558 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 515617 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 515618 CCCGACGGGGAG 515629 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 518158 TAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 518217 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 518218 TTCCCCGACGGGGAG 518232 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 515558 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 515617 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 515618 CCCGACGGGGAGG 515630 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 515629 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 515570 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 515569 TACTAACGAGGAT 515557 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||| Sbjct 518235 CACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 518176 Query 139410 CTATACTAACGAGGA 139424 ||||||||||||||| Sbjct 518175 CTATACTAACGAGGA 518161 >seq16981 Length=910028 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 870 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 811 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 810 CCCCGACGGGGAGG 797 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 869 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 810 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 809 CCCGACGGGGAG 798 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 798 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 857 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 858 TACTAACGAGGA 869 >seq9903 Length=2515388 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||| ||||||||||||| ||| | |||| ||||| | |||||||||||||||||||| Sbjct 450039 GTCCTCATTAGTATAGTGGTGAGTGTCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 450098 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 450099 CCCCGACGGGGAGG 450112 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||| ||||||||||||| ||| | |||| ||||| | ||||||||||||||||||||| Sbjct 450040 TCCTCATTAGTATAGTGGTGAGTGTCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 450099 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 450100 CCCGACGGGGAG 450111 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||| | | ||||||| Sbjct 450111 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGACACTCACCACTA 450052 Query 139413 TACTAACGAGGA 139424 |||||| ||||| Sbjct 450051 TACTAATGAGGA 450040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652594164720720