Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq20241 136 4e-27 seq4839 127 2e-24 seq10790 123 2e-23 seq24420 116 4e-21 seq5365 96.9 3e-15 seq451 84.2 2e-11 seq14188 82.4 7e-11 >seq20241 Length=2711202 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| |||| Sbjct 1753157 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 1753215 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||||||||| || |||||| || Sbjct 1753216 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCT 1753275 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 1753276 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 1753335 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1753336 TCTTCACGAAGATCTGCAT 1753354 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| |||| Sbjct 1753385 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 1753443 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||||||||| || |||||| || Sbjct 1753444 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCT 1753503 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 1753504 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 1753563 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1753564 TCTTCACGAAGATCTGCAT 1753582 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| |||| Sbjct 1753613 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 1753671 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||||||||| || |||||| || Sbjct 1753672 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCT 1753731 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 1753732 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 1753791 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1753792 TCTTCACGAAGATCTGCAT 1753810 Score = 120 bits (132), Expect = 3e-22 Identities = 150/201 (75%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| |||| Sbjct 1753841 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 1753899 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTC--GGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 | || | ||||||| ||||||||| ||| ||||||||||| | || |||||| Sbjct 1753900 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGGGATGCCTTC--TATCCTGGATCTTGGC 1753957 Query 133580 CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 ||| | | ||| | ||||| |||||||||| || | ||||| ||| || |||||||| Sbjct 1753958 CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAG 1754017 Query 133640 AGTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| Sbjct 1754018 GGTCTTCACGAAAATCTGCAT 1754038 >seq4839 Length=4080137 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| || | Sbjct 528931 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGTTTCC 528873 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| |||| ||||||||| || |||||||| |||||||| |||||| || Sbjct 528872 CGGCAAAAATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 528813 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| || |||||||| | Sbjct 528812 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGG 528753 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 528752 TCTTCACGAAGATCTGCAT 528734 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| |||| Sbjct 529159 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 529101 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | || | || ||||||||| || |||||||| |||||||| |||||| || Sbjct 529100 CCGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 529041 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| || |||||||| | Sbjct 529040 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGG 528981 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 528980 TCTTCACGAAGATCTGCAT 528962 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| || | Sbjct 529387 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGTTTCC 529329 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| |||||||| |||||| || Sbjct 529328 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 529269 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| || |||||||| | Sbjct 529268 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGG 529209 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 529208 TCTTCACGAAGATCTGCAT 529190 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || ||||| |||| Sbjct 529615 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 529557 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | || | || ||||||||| || |||||||| |||||||| |||||| || Sbjct 529556 CCGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 529497 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| || |||||||| | Sbjct 529496 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGG 529437 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 529436 TCTTCACGAAGATCTGCAT 529418 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 528703 GGTCGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCC 528644 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| || || || |||||| ||| Sbjct 528643 GGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCCTGGATCTTCCCCTT 528584 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | |||| ||| || || |||| || Sbjct 528583 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTACCAGTCAAGGT 528524 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 528523 CTTCACGAAGATCTGCAT 528506 >seq10790 Length=2053270 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || |||||||| || ||| | ||| || ||||| ||||| Sbjct 1303332 GGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCCAGCTGTTTGCC 1303273 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | |||||| ||||||||| || ||||||||||| || || |||||| ||| Sbjct 1303272 TGCAAACGTGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 1303213 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 1303212 CACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 1303153 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||| |||||||| Sbjct 1303152 CTTCCCGAAGATCTGCAT 1303135 >seq24420 Length=3268280 Score = 116 bits (128), Expect = 4e-21 Identities = 151/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| ||| ||||||||||| || |||||||| | ||| | | | || || | ||| Sbjct 2497470 TGTAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCATCTG 2497528 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||| || | | ||||| |||||||||||| ||||||||||| || || |||||| Sbjct 2497529 TTTGCCTGCAAAGAGGAGCCTCTGCTGGTCGGG-GGGATGCCTTCTTTATCCTGGATCTT 2497587 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | |||| ||||| ||||||| || || | ||||| ||| |||| ||| Sbjct 2497588 GGCCTTCACATTCTCA---GTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCAGGT 2497644 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || ||||| |||||||| Sbjct 2497645 CAGGGTCTTCACGAAGATCTGCAT 2497668 >seq5365 Length=1496801 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||| ||| ||||| || || || ||| | | | |||| ||||| ||||| Sbjct 701836 GTGGACTCTTCCTGGATATTATAGTCTGACAGAGTGCGGCCA-TCCTTCAGCTGTTTGCC 701894 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || | |||| || ||||||||||| || || |||| |||||||| ||| ||| || | Sbjct 701895 CGTGAAAATCAGACGCTGCTGGTCAGGTGGACTGCCCTCCTTGTCTTGGAT-TTTAGCTT 701953 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| ||||||| | || | |||| ||| ||||| ||| | Sbjct 701954 TGACATTCTCAGTGGTGTCACTGGGCTCGATCTCTAGAGTGATGGTCTTGCCCATCAAGG 702013 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 702014 TCTTCACAAAGATCTGCAT 702032 >seq451 Length=5792110 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || | | |||||||| ||||| || ||||||||||| |||| Sbjct 1082912 TGCTTGCCAGCAAAGATCGGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATC 1082853 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | | | || | ||| || || |||| |||||||| || || Sbjct 1082852 TTGGCCTTTACGTTTTCTATCATATCCGAGGGTTCGACCTCGAGAGTGACGGTCTTCCCC 1082793 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||||||||| Sbjct 1082792 GTCAGGGTCTTCACGAAAATCTGCAT 1082767 >seq14188 Length=5250308 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || | |||||| || | || || | |||||||| ||||| || ||||||||| Sbjct 4004146 TCTTCCAGTTACTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTG 4004205 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | || || | ||| || || |||| |||| | Sbjct 4004206 TCCTGGATCTTGGCCTTCACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATG 4004265 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| || || |||||||||||||| Sbjct 4004266 GTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 4004300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483235208712120