Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq8192 277 2e-69 seq16622 206 3e-48 seq25180 127 2e-24 seq17315 82.4 9e-11 >seq8192 Length=2942228 Score = 277 bits (306), Expect = 2e-69 Identities = 664/1001 (66%), Gaps = 9/1001 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| |||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 678902 CCAGGGCCTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 678961 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||||||||| ||||||| ||| ||| | | || ||||| || | || |||| Sbjct 678962 TGTCGAACTTGTTGGCGAACAAGTGGTGCACGCGC---AACATCCAGTTCAAGTCACCCG 679018 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || |||||||| |||||||| | ||||||||||||||| || |||| || | Sbjct 679019 CTCCGAAAACACACACGGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCT 679078 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || ||||| | || || |||||||||| Sbjct 679079 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCAATTGCGTGCATGTCGG 679138 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | | |||||||| | | | | || | ||| || || | || | ||||| | || Sbjct 679139 ACATATCGTACTTATGGCTTAAGGACAGTGATCCTGGGACTTCGGGGATCCTCTGAATAG 679198 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | ||||| || || || || || || | ||||||||| |||| | Sbjct 679199 TGGCCCAGAGATACTCGTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTA 679258 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | || | || || || ||| | || | ||| || || || | Sbjct 679259 TTTTTTCATTCTCGAGCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGC 679318 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | |||||| | |||||| ||| |||| | | Sbjct 679319 CTGAAAACAGAGGTGTTTCAAGAGGAGGATGTATTTTGTCGGTCCCCATGTTTGTCAACT 679378 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | ||||| | | ||| ||||||| | | ||| ||| | | | Sbjct 679379 TTCCATTCACGACTGCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCT 679438 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| | || ||| || | ||| |||| | || || || || |||| Sbjct 679439 CCGTTTCTAGGTTATTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGG 679498 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | ||||||||||| || | || ||||| | || | | || Sbjct 679499 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTC 679558 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| || || ||||| | Sbjct 679559 GGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAA 679618 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA--- 162835 | ||||||| | | |||| ||||||||||| |||||| || | || || |||| Sbjct 679619 CACTCTCCAGCTGACTGGCCACAAAGACATTACTGAAACAGGATGCAATGCCAATCACCG 679678 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 |||||| || | || || | ||| |||| ||||| | ||| || | |||||||| Sbjct 679679 CGGCCAAAAAGGA-TTC--CTCTGATTTTGTATCCACGTGAATGCAATAGAAATTCTGAG 679735 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | || ||||| ||||| | || || | ||| || || || || || ||||| | || Sbjct 679736 GCATATAAATGGCTCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAG 679795 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || ||||| ||||| || ||| || | || || || ||||| | Sbjct 679796 AATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGCGGTTCTTCAATATATTTGCGCT 679855 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | || | ||||| || |||||||| | |||| Sbjct 679856 TCTTGATGAAAGAAGCACAATCACTGGTCATGTTTATGTAG 679896 >seq16622 Length=1053215 Score = 206 bits (228), Expect = 3e-48 Identities = 239/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || || || ||||| ||||| || | | Sbjct 776530 CAAAGAGAGTGAGGCAGGCTATTCCAGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 776589 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| |||||||| |||| |||||| ||||| || || | || || || ||| Sbjct 776590 ACTTGTAACACCCTTCGTCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 776649 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 776650 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 776709 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| ||| || ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 776710 TCTGGCTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 776769 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | |||| ||||||||||||||||||||||||| ||||| || | Sbjct 776770 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGCGTTCAGCAACT 776829 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | ||||| || |||| Sbjct 776830 CTCTTACATCTTGGGTCTCCAC 776851 Score = 105 bits (116), Expect = 8e-18 Identities = 160/226 (71%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||| | || | ||| |||||||||| Sbjct 773928 ACAGTTTCCCTGTAGTCAGTCACAGTCCCCAGGTGCAGTACCTGGCAGATCACCTCCT-- 773985 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| | || || ||||| || ||||| || ||||| Sbjct 773986 -TCCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGACGTTGTCCCA 774044 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | ||| |||| | | |||||| || || | | || || | || ||||| Sbjct 774045 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCAGTCTCTGACCCAGAGACCTTCCAG 774101 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || | ||| ||||| | |||| | ||||||||||| || |||| Sbjct 774102 GAGATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 774147 >seq25180 Length=2147484 Score = 127 bits (140), Expect = 2e-24 Identities = 419/640 (65%), Gaps = 15/640 (2%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | ||||||||| | | || || | | | Sbjct 598680 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 598621 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 598620 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 598561 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || ||||| |||| || | || | || || | || |||| || || Sbjct 598560 TCTCATAGTTTTCTCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 598501 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 598500 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 598441 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 598440 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 598383 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 598382 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 598324 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| ||||||| || || Sbjct 598323 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-TTCTTTGCTTGGCAC---- 598269 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 598268 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 598210 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420 ||||||| | || || | || || ||||| |||| || || || || ||| Sbjct 598209 AGTCGCGGCGATAAGTCAGAGTCAGGTTGAACAGGTGCTCAATGCCGCTCTTCTGGGGTG 598150 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | | | Sbjct 598149 TGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTCGCCTGCT 598090 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTG 177520 ||||| | || |||| ||| || |||| ||| || Sbjct 598089 GAGGTAAATTAGCCAGATCCCAACTGATGTCTCGGTGATG 598050 >seq17315 Length=6091571 Score = 82.4 bits (90), Expect = 9e-11 Identities = 223/336 (66%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | ||||| || || || || ||| | | |||||| Sbjct 3406432 ACCATCTCAGCATTGGTCTTTATAGGAAAATCTGTCCCACATGTATTCAGTAAGTATTTC 3406491 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | | ||| || | | || || | | ||||||||| || ||||| || | Sbjct 3406492 CA--TGGCACCGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 3406549 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || ||||| || || | ||||| || |||| | |||||||| ||| || | Sbjct 3406550 ACCAGGAGGCGTAAACCACCCGGACCAACTTACTGGCCATGAAGACATTTGGGAAGCAGG 3406609 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| || || || Sbjct 3406610 AAATAATGGCCCTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCCACATGGAC 3406667 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||||| ||||||||||| || | || | ||| | | || || | || ||||| Sbjct 3406668 GCAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCAAAATTTTCAATCTT 3406727 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| || || |||||||| || Sbjct 3406728 CTCATGGACCACCATAGAGTATGCGATGGGGAAGTC 3406763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578209932724800