Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq8192 277 2e-69
seq16622 206 3e-48
seq25180 127 2e-24
seq17315 82.4 9e-11
>seq8192
Length=2942228
Score = 277 bits (306), Expect = 2e-69
Identities = 664/1001 (66%), Gaps = 9/1001 (1%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| |||||| | |||| ||| || | |||||||| || || | ||| |||
Sbjct 678902 CCAGGGCCTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 678961
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
||||||||||| ||||||| ||| ||| | | || ||||| || | || ||||
Sbjct 678962 TGTCGAACTTGTTGGCGAACAAGTGGTGCACGCGC---AACATCCAGTTCAAGTCACCCG 679018
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| || |||||||| |||||||| | ||||||||||||||| || |||| || |
Sbjct 679019 CTCCGAAAACACACACGGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCT 679078
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| | || || || |||| |||||||| || ||||| | || || ||||||||||
Sbjct 679079 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCAATTGCGTGCATGTCGG 679138
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| | |||||||| | | | | || | ||| || || | || | ||||| | ||
Sbjct 679139 ACATATCGTACTTATGGCTTAAGGACAGTGATCCTGGGACTTCGGGGATCCTCTGAATAG 679198
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| || | ||||| || || || || || || | ||||||||| |||| |
Sbjct 679199 TGGCCCAGAGATACTCGTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTA 679258
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
||| || | || | || || || ||| | || | ||| || || || |
Sbjct 679259 TTTTTTCATTCTCGAGCACATACTCCACATACCTCCTACTGACCACAAAATAGGCACTGC 679318
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538
| ||||||| ||| | | |||||| | |||||| ||| |||| | |
Sbjct 679319 CTGAAAACAGAGGTGTTTCAAGAGGAGGATGTATTTTGTCGGTCCCCATGTTTGTCAACT 679378
Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598
|||| | ||||| | | ||| ||||||| | | ||| ||| | | |
Sbjct 679379 TTCCATTCACGACTGCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCT 679438
Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658
| || ||||| | || ||| || | ||| |||| | || || || || ||||
Sbjct 679439 CCGTTTCTAGGTTATTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGG 679498
Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718
| |||| ||||| || | ||||||||||| || | || ||||| | || | | ||
Sbjct 679499 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCGTTCATTC 679558
Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778
||| || ||||| | ||||| || || ||||| || || ||||| || || ||||| |
Sbjct 679559 GGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCAAGATGCATACACAA 679618
Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA--- 162835
| ||||||| | | |||| ||||||||||| |||||| || | || || ||||
Sbjct 679619 CACTCTCCAGCTGACTGGCCACAAAGACATTACTGAAACAGGATGCAATGCCAATCACCG 679678
Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895
|||||| || | || || | ||| |||| ||||| | ||| || | ||||||||
Sbjct 679679 CGGCCAAAAAGGA-TTC--CTCTGATTTTGTATCCACGTGAATGCAATAGAAATTCTGAG 679735
Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955
| || ||||| ||||| | || || | ||| || || || || || ||||| | ||
Sbjct 679736 GCATATAAATGGCTCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTACAG 679795
Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015
|||| ||||| || ||||| ||||| || ||| || | || || || ||||| |
Sbjct 679796 AATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGCGGTTCTTCAATATATTTGCGCT 679855
Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056
| | | || | ||||| || |||||||| | ||||
Sbjct 679856 TCTTGATGAAAGAAGCACAATCACTGGTCATGTTTATGTAG 679896
>seq16622
Length=1053215
Score = 206 bits (228), Expect = 3e-48
Identities = 239/322 (74%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| | || || || || || || ||||| ||||| || | |
Sbjct 776530 CAAAGAGAGTGAGGCAGGCTATTCCAGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 776589
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| |||||||| |||| |||||| ||||| || || | || || || |||
Sbjct 776590 ACTTGTAACACCCTTCGTCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 776649
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || || || ||||| | | |||||| || | ||||||||| ||||| || || |
Sbjct 776650 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 776709
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
||| ||| || ||| ||||||||| ||||| |||||| || || ||||| || || |
Sbjct 776710 TCTGGCTAAAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 776769
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| |||||||| | | |||| ||||||||||||||||||||||||| ||||| || |
Sbjct 776770 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGCGTTCAGCAACT 776829
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| ||| | ||||| || ||||
Sbjct 776830 CTCTTACATCTTGGGTCTCCAC 776851
Score = 105 bits (116), Expect = 8e-18
Identities = 160/226 (71%), Gaps = 9/226 (4%)
Strand=Plus/Plus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
||||||| ||| ||| || |||||||||| ||| | || | ||| ||||||||||
Sbjct 773928 ACAGTTTCCCTGTAGTCAGTCACAGTCCCCAGGTGCAGTACCTGGCAGATCACCTCCT-- 773985
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| ||||| || || ||||| | || || ||||| || ||||| || |||||
Sbjct 773986 -TCCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGACGTTGTCCCA 774044
Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679
|| | ||| |||| | | |||||| || || | | || || | || |||||
Sbjct 774045 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCAGTCTCTGACCCAGAGACCTTCCAG 774101
Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725
| || | ||| ||||| | |||| | ||||||||||| || ||||
Sbjct 774102 GAGATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 774147
>seq25180
Length=2147484
Score = 127 bits (140), Expect = 2e-24
Identities = 419/640 (65%), Gaps = 15/640 (2%)
Strand=Plus/Minus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || | | ||||||||| | | || || | | |
Sbjct 598680 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTATCTACTTCCTTCAGATACTTTG 598621
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| |||||||| | ||| | || | ||||
Sbjct 598620 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 598561
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || || || ||||| |||| || | || | || || | || |||| || ||
Sbjct 598560 TCTCATAGTTTTCTCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 598501
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
|||||| ||||| || || || || |||| | ||||| ||||| | ||||| ||||
Sbjct 598500 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 598441
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
| || | ||||| ||| || || || | | ||| | ||| ||||| | | | |
Sbjct 598440 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 598383
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || ||| ||| || ||||| ||| || || || || | |
Sbjct 598382 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 598324
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || |||||||| |||||||| ||||||| || ||
Sbjct 598323 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-TTCTTTGCTTGGCAC---- 598269
Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360
||| | || || | || | | || | ||| | | ||||| ||||| || ||||| |
Sbjct 598268 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 598210
Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420
||||||| | || || | || || ||||| |||| || || || || |||
Sbjct 598209 AGTCGCGGCGATAAGTCAGAGTCAGGTTGAACAGGTGCTCAATGCCGCTCTTCTGGGGTG 598150
Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480
||| | | || ||||| || |||||||| ||||| || || |||| ||| || | | |
Sbjct 598149 TGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTCGCCTGCT 598090
Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTG 177520
||||| | || |||| ||| || |||| ||| ||
Sbjct 598089 GAGGTAAATTAGCCAGATCCCAACTGATGTCTCGGTGATG 598050
>seq17315
Length=6091571
Score = 82.4 bits (90), Expect = 9e-11
Identities = 223/336 (66%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||| | ||||| || || || || ||| | | ||||||
Sbjct 3406432 ACCATCTCAGCATTGGTCTTTATAGGAAAATCTGTCCCACATGTATTCAGTAAGTATTTC 3406491
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|| | | | ||| || | | || || | | ||||||||| || ||||| || |
Sbjct 3406492 CA--TGGCACCGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 3406549
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || ||||| || || | ||||| || |||| | |||||||| ||| || |
Sbjct 3406550 ACCAGGAGGCGTAAACCACCCGGACCAACTTACTGGCCATGAAGACATTTGGGAAGCAGG 3406609
Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878
||| || || | || ||| | ||| | | || | ||| ||| || || ||
Sbjct 3406610 AAATAATGGCCCTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCCACATGGAC 3406667
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
|||||||| ||||||||||| || | || | ||| | | || || | || |||||
Sbjct 3406668 GCAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCAAAATTTTCAATCTT 3406727
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974
| || ||||| ||||| || || |||||||| ||
Sbjct 3406728 CTCATGGACCACCATAGAGTATGCGATGGGGAAGTC 3406763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578209932724800
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