Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4839 98.7 7e-16 seq5365 84.2 1e-11 >seq4839 Length=4080137 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || || || |||||| || |||||||| || || Sbjct 528732 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAC 528673 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 528672 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 528613 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || || ||| || | | | || | |||||| || | ||||| Sbjct 528612 ATGCCCTCTTTTTCCTGGATCTTCCCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 528554 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || ||||| || || || || || ||||||||||| || Sbjct 528553 CTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCATTGT 528503 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 528960 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 528901 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| ||||||||||||| | |||||| || | || Sbjct 528900 AGAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAAATCAGCCTCTGCTGGTCAGGGGGG 528841 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| || | || | |||||| || | ||||| Sbjct 528840 ATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCAC 528782 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 528781 CTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 528734 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 529188 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 529129 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || ||||| ||||| | |||||| || | || Sbjct 529128 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGGGGG 529069 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| || | || | |||||| || | ||||| Sbjct 529068 ATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCAC 529010 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 529009 CTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 528962 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 529644 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 529585 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || ||||| ||||| | |||||| || | || Sbjct 529584 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGGGGG 529525 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| || | || | |||||| || | ||||| Sbjct 529524 ATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCAC 529466 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 529465 CTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529418 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 529416 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 529357 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| || | | |||||| || | || Sbjct 529356 AGAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 529297 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| || | || | |||||| || | ||||| Sbjct 529296 ATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCAC 529238 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 529237 CTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529190 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | |||| || |||||| ||||| || |||||||| || | Sbjct 529874 CACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAG 529815 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| ||||| |||||||| || | | |||||| || | | Sbjct 529814 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 529755 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || |||| | | || | |||||| || | ||| Sbjct 529754 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCACTGGGCTCC 529696 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || ||||| || | || || || ||||||||||| Sbjct 529695 ACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529646 >seq5365 Length=1496801 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || ||| | |||||| || |||||| ||||| || || || || || || Sbjct 701806 CCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTCCTGGATATTATAGTCTGAC 701865 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || | || ||||| || | ||||||| ||||||||| || | || Sbjct 701866 AGAGTGCGGCCATCCTTCAGCTGTTTGCCCGTGAAAATCAGACGCTGCTGGTCAGGTGGA 701925 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 || || ||||| ||||| ||| | ||| ||| |||||| || | || | Sbjct 701926 CTGCCCTCCTTGTCTTGGATTTTAGCTTTGA-CATTCTCAGTGGTGTCACTGGGCTCGAT 701984 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || | || || || |||||||||||||| Sbjct 701985 CTCTAGAGTGATGGTCTTGCCCATCAAGGTCTTCACAAAGATCTGCAT 702032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328580961264960