Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq12372 100 8e-17 seq7504 80.6 7e-11 >seq12372 Length=38393 Score = 100 bits (110), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276 ||| || ||| | || | ||||||||| ||||| || | | ||| ||| ||| || Sbjct 38303 GCCGTTGATGTCGACAATGATTTCAGTGGTGTAACGCTTGATGCCGTCCTTCTCC---CA 38247 Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCT 336 || ||| ||||||||| |||||| ||| | | | |||||||||||||||| || Sbjct 38246 CTCGCGGGTTTGCAGCTTGCCTTCGATGTAGCATTGGGAACCTTTGCGCAGGTACTCGCC 38187 Query 337 GGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTT 396 |||||| || |||| ||| ||||| | |||||||||||| || || || ||| Sbjct 38186 GGCGATCTCGGCCACCTTGCCGAACAACGACACGCGGTGCCACTCGGTGCGCTCGACCTT 38127 Query 397 CTCCCCTGTCTGCTTATCCTTCCA 420 || ||| || ||||| || |||| Sbjct 38126 CTGCCCGGTTTGCTTGTCGGTCCA 38103 >seq7504 Length=9783 Score = 80.6 bits (88), Expect = 7e-11 Identities = 144/206 (70%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276 ||| || ||| | || | ||||||||| |||||||| | | ||| | | ||| || Sbjct 3118 GCCGTTGATGTCAACGATGATTTCAGTGGTGTAGCGCTTGATGCCGTCTTTTTCC---CA 3062 Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAA-CACCTTGCTG-CCTTTGCGCAGGTACTGG 334 || || || |||||| |||||| ||| | ||| ||| |||||||||||||||| | Sbjct 3061 CTCACGGGTCTGCAGCTTGCCTTCGATGTAGCAC--TGCGAACCTTTGCGCAGGTACTCG 3004 Query 335 CTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTC 394 | ||| || || || | ||| ||||| | ||| ||||||||||| || || | Sbjct 3003 CCGGCAATCTCAGCAACCTTGCCGAACAGCGACACACGGTGCCATTCGGTACGCTCGACC 2944 Query 395 TTCTCCCCTGTCTGCTTATCCTTCCA 420 |||| || | |||||| || |||| Sbjct 2943 TTCTGGCCCGACTGCTTGTCGGTCCA 2918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135352216751578