Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq19287 116 1e-22 seq17485 107 6e-20 seq5292 104 7e-19 seq4839 102 3e-18 seq30487 98.7 3e-17 seq18404 98.7 3e-17 seq14511 98.7 3e-17 seq13862 98.7 3e-17 >seq19287 Length=754390 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 614996 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 615055 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 615056 CCGGGTTTCAGC 615067 >seq17485 Length=1084964 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1065761 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1065702 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 1065701 CCGGGTTTCAGC 1065690 >seq5292 Length=1841388 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 1050356 GCTGAAATAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1050415 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 1050416 CCTGGTTTCGGC 1050427 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 1029320 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 1029379 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1029380 TCCCGGGTTTCGGC 1029393 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | Sbjct 1056675 GCCGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAAATCTAAAGGTCCCTGGTTCAATC 1056616 Query 2829 CCGGGCTTCAGC 2840 ||| | ||| || Sbjct 1056615 CCGAGTTTCGGC 1056604 >seq4839 Length=4080137 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 517623 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 517682 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 517683 TCCCGGGTTTCGGC 517696 >seq30487 Length=1265950 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct 866416 GCTGAAATAGCTCAGTTGGGAAAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 866475 Query 2829 CCGGGCTTCAGC 2840 | ||| |||||| Sbjct 866476 CTGGGTTTCAGC 866487 >seq18404 Length=2812902 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1856565 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1856624 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1856625 CCGGGTTTCGGC 1856636 >seq14511 Length=1646857 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 328099 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 328040 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 328039 CCGGGTTTCGGC 328028 >seq13862 Length=6458357 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 382120 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 382179 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 382180 CCGGGTTTCGGC 382191 Score = 78.8 bits (86), Expect = 3e-11 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||| ||||| | ||||||||||||||| |||| ||||||||||| | |||| Sbjct 376557 GAAATAGCTCAGGTGGGAAACCATTAGACTGAAGATTTAAAAGTCCCTGGTTCGATCCCG 376616 Query 2832 GGCTTC 2837 || ||| Sbjct 376617 GGTTTC 376622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844275747885