Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq16622 282 5e-71
seq17408 183 4e-41
seq26173 172 6e-38
seq29423 141 1e-28
seq29056 122 1e-22
>seq16622
Length=1053215
Score = 282 bits (312), Expect = 5e-71
Identities = 254/319 (80%), Gaps = 0/319 (0%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
|||| |||||| |||| || | | |||||||| | || || || | | |||||| |||
Sbjct 776851 GTGGAGACCCAAGATGTAAGAGAGTTGCTGAACGCACCTGCTTCTTTAAGATGCTCTCTG 776792
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| | | | ||||| || ||||||| || ||||| ||||||||| | | |||||
Sbjct 776791 CAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 776732
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||||| || |||||| | |||| ||||| || |||||||| || ||||||||||||
Sbjct 776731 AACATGATCACCTTTAGCCAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAG 776672
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
||||||||||||||||| |||||| ||||||||||| || || ||||||||||||||
Sbjct 776671 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 776612
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
|| ||||| ||||| ||||| |||||||| || |||||||| |||||||| ||||| ||
Sbjct 776611 GAAGACGAAGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCTGGA 776552
Query 171372 GTGGCCTGCCTCACCCTCT 171390
| ||||||||||| ||||
Sbjct 776551 ATAGCCTGCCTCACTCTCT 776533
Score = 224 bits (248), Expect = 1e-53
Identities = 216/277 (78%), Gaps = 0/277 (0%)
Strand=Plus/Minus
Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452
|| |||||||| || ||||| || |||||||| | ||| |||||||| || ||||| ||
Sbjct 774193 GTACAGCCCACAGTATTTCTTCACTATAAATTATCTGAAGACCACCTAAATATCACTTGC 774134
Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512
||||||||||| ||||| | ||| ||| | |||||| | || |||||||| | |||
Sbjct 774133 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTCTGGGTCAGAGACTGAG 774074
Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572
||||||| ||| |||| || || | ||||| || || ||||| ||||| | |||||
Sbjct 774073 AACAGTACTGAGATTCTCTCACACCCCAATGGGACAACGTCTGTCACCAGCATCCTCCAG 774014
Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632
| |||||||||||||||||| |||| |||||||| |||||||| || |||||||||
Sbjct 774013 ATCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGATCTGCCAGGTACTGCACCTGGGG 773954
Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669
| ||| ||| ||| ||||||||||| | ||| ||||
Sbjct 773953 ACTGTGACTGACTACAGGGAAACTGTGAACAAAGGTA 773917
>seq17408
Length=748846
Score = 183 bits (202), Expect = 4e-41
Identities = 140/166 (84%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | ||||||||||||||| | ||||||||| ||||||||
Sbjct 535762 CTTCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 535821
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| || |||||||||||||| || |||||||||||||||||||| || ||||| ||||
Sbjct 535822 GGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 535881
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147
|||||||||||||||| ||| ||||||||| || || ||||||
Sbjct 535882 CACCACGTAAAACTGGCAAAGGGCGTGGCACGGAGGTAGGGCCATG 535927
>seq26173
Length=4939203
Score = 172 bits (190), Expect = 6e-38
Identities = 261/369 (71%), Gaps = 2/369 (1%)
Strand=Plus/Minus
Query 146772 CTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAATC 146831
|||||| |||| |||| || | ||| || || |||||| || | ||| ||
Sbjct 2187697 CTAAACAGCCATTTCCATTTTAATAGTGGGATGGGGACTGTAGCCTTCAATCTGAAAGTC 2187638
Query 146832 TTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGG 146891
||| ||| ||| || || || | ||| || || | || |||||||| ||||| ||
Sbjct 2187637 TTCAGCCTTGAGGTCATCGATTTTCTCAACTTTCCCAAGGATTTTGAGCTTTGGGAAAGG 2187578
Query 146892 TCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGC 146951
| | || | ||||| |||||||| |||| ||| | ||||| | ||| ||
Sbjct 2187577 CCTTGATTTTCCCTAAAGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGTAAATGTGTGC 2187518
Query 146952 GTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTA 147011
|| |||| ||||| ||| |||| || ||||| ||||| || | ||| || | ||||||
Sbjct 2187517 ATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTA 2187458
Query 147012 GGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCT 147071
||||||||| | |||||||| |||||||||| || ||||||||| |||| || ||| |
Sbjct 2187457 GGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACTT 2187398
Query 147072 CTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCA 147131
||||||||||| ||| || || || || ||||||| || ||||| ||| |||||
Sbjct 2187397 CTGGTACAGCT-GCAGGACAG-TCATGGTTCACCACGTAGAAGTGGCAAAGGGCATGGCA 2187340
Query 147132 CGGCGGCAG 147140
| | |||||
Sbjct 2187339 CAGGGGCAG 2187331
>seq29423
Length=3049034
Score = 141 bits (156), Expect = 1e-28
Identities = 130/167 (78%), Gaps = 12/167 (7%)
Strand=Plus/Minus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| |||||||| ||||||||| ||||||||||||
Sbjct 2663940 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2663881
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||| | || ||||| |||| || ||||| || ||||
Sbjct 2663880 TGCCGCAGGCTGAGGACCA------------TGGCCCCAACATCAAAGAGCACGTGAACT 2663833
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||| ||||| |||||||| || || ||||| |||| |||
Sbjct 2663832 CCCTGGGGGAGAAGCTGAAGACCCTCAGGCTGCGGCTGAGGCGCTGT 2663786
Score = 113 bits (124), Expect = 5e-20
Identities = 77/87 (89%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| |||||||| |||||||| |||||||||||||| || || || |||||||
Sbjct 2661590 AGCTCCAAGACAAGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 2661531
Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548
||||||| |||||||||||||| ||||
Sbjct 2661530 TAGAAGCCTACATGACAACAAAGATGA 2661504
>seq29056
Length=1419073
Score = 122 bits (134), Expect = 1e-22
Identities = 539/840 (64%), Gaps = 54/840 (6%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||| || |||||||| | |||| || | ||||||| ||||| | | ||||||
Sbjct 328659 GTATTCCCTGGTGTTCACGGTTGGTCTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 328718
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
||| ||||| | |||| |||| ||||||||||||| |||| |||| ||||| || ||
Sbjct 328719 AAAATACAACAAGCTCCGGATTATGACCAACATCTACCTGCTCAATTTGGCCATTTCCGA 328778
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
| |||| | | ||||| || || || |||||||||| | ||| |||| ||
Sbjct 328779 CTTGCTCTTCTTATTCACTCTGCCATTCTGGATTCACT--ATGTTGGGTGGAA----TGA 328832
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
||||| | || ||| ||||||||||| | || || | || ||| ||||
Sbjct 328833 GTGGGTTTTTGGCCCCCATATGTGTAAGTTGCTCTCTGGGCTCTATTACATGGGCTTGTA 328892
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909
|||||| || | || ||| | || |||| | ||| ||||||| || | || ||||
Sbjct 328893 CAGCGAGATCTTCTTCATCGTACTCCTGACCATAGACCGGTATCTGGCCATCGTTCACGC 328952
Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCA--ATAGGCATCCTCGCCAGCCTCCTGGCC 8967
||| | | | | ||| | |||| | || ||| || ||||| || | ||
Sbjct 328953 TGTGTTTGCCCTTCGAGCCCGGACG--ACCACTTTCGGTATCATCACCAGCATCTTCACC 329010
Query 8968 TGGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCC 9027
||| ||||| | ||| | | || | || || |||||||| |||| ||| | | |
Sbjct 329011 TGGGGCCTGGCAGGGTTAGCAGCCCTCCCTGAATTTATCTTCCATGAGTCCCAAGAGGAG 329070
Query 9028 ACAGGCAAGGGGGTCTGCCAAGCCTCCT---ACACAGACT----------TTTGGAAGGG 9074
| || |||| || |||| | || ||| | |||||| |
Sbjct 329071 TTTGAACAGACTTTCTG-CAGTCCTCTTTACCCAAAGAATGGAGAAAATGCCTGGAAGTG 329129
Query 9075 GGTTGATGTTACCAGCATGACCAT----GGTCACCCTCATCCTGCCTTTGCTTATCATGG 9130
| ||| | || |||| || |||| | || |||||| |||| | ||||
Sbjct 329130 TTTCCATGCTCTGAGGATGAATATCTTGGGTCTCGCT----CTGCCTCTGCTCGTTATGG 329185
Query 9131 CCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAAC 9189
|| ||||||||| |||||| || || || | | |||| || || | |||
Sbjct 329186 CCATCTGCTACTCAGGAATCATTAAAACACTGCTGAGATGCCC-CA----GTAAAAAAAA 329240
Query 9190 CTGC-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCC 9248
| | | ||| || ||||||||| |||| ||||| | | ||||| || |||| ||
Sbjct 329241 ATACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTCTTTGTTTTCTGGACACC 329300
Query 9249 CTACAA---CGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTG 9305
|||||| || | ||| | | | || | ||| | || | | | | || ||
Sbjct 329301 CTACAATCTGGTTGTCCTCCTCTCA---ACTTTTCAA-ATGC--ACCTGGAGACTGAGTG 329354
Query 9306 TGAAGCGCGGCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCAC 9362
||| || | |||| | ||||| ||||| | ||||| | ||| ||||||| | |||
Sbjct 329355 TGA---GCAGAGCAGACAGCTGGACCTGGCCATGCTGGTGACGGAGGTGATCGCGTACAC 329411
Query 9363 CCACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422
||||||||| ||||||||||| |||||||| || || || || | |||||| || ||||
Sbjct 329412 CCACTGCTGTGTCAACCCCGTGATCTACGCCTTCGTTGGTGAGAGGTTCCAGAAGCACCT 329471
Score = 114 bits (126), Expect = 2e-20
Identities = 207/297 (70%), Gaps = 12/297 (4%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||| ||| | |||| || || ||||| ||| ||| |||| ||||||||
Sbjct 253290 GTACTCAGTGGTATTTGTCATTGGCCTGATAGGCAACATCCTAGTGGTCCTGGTCCTCAT 253231
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
| ||||||||||||| | |||||| | ||||| ||| |||||||||| | |||
Sbjct 253230 GCAATACAAGAGGCTCAAAAGCATGACGAGCATCTACCTCCTCAACCTGGCTGTGTCTGA 253171
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
|||| || | | ||||| || ||||| |||||| ||| | | | ||| | ||
Sbjct 253170 CCTGATGTTCCTCTTCACGCTGCCCTTCTGGATTGACTACAA-----GCTGAA-GGATGA 253117
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTAT-AGTGGGC-CT-TTGCAACGTGGCACT 8846
|||| | | |||||||||||||| | ||||| || || || ||| |
Sbjct 253116 CTGGGTTTTTGGTGATCACATGTGTAAGTTGCTCTCTGGGCTCTATTTCA---TGGGCTT 253060
Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903
||||||||| || | || ||||||||| |||| | |||||||| || || ||||
Sbjct 253059 GTACAGCGAGATCTTCTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATTGT 253003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583263991663200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |