Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq16622 282 5e-71 seq17408 183 4e-41 seq26173 172 6e-38 seq29423 141 1e-28 seq29056 122 1e-22 >seq16622 Length=1053215 Score = 282 bits (312), Expect = 5e-71 Identities = 254/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||| |||||| |||| || | | |||||||| | || || || | | |||||| ||| Sbjct 776851 GTGGAGACCCAAGATGTAAGAGAGTTGCTGAACGCACCTGCTTCTTTAAGATGCTCTCTG 776792 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 776791 CAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 776732 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || |||||| | |||| ||||| || |||||||| || |||||||||||| Sbjct 776731 AACATGATCACCTTTAGCCAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAG 776672 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 776671 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 776612 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || ||||| ||||| ||||| |||||||| || |||||||| |||||||| ||||| || Sbjct 776611 GAAGACGAAGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCTGGA 776552 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 776551 ATAGCCTGCCTCACTCTCT 776533 Score = 224 bits (248), Expect = 1e-53 Identities = 216/277 (78%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || ||||| || |||||||| | ||| |||||||| || ||||| || Sbjct 774193 GTACAGCCCACAGTATTTCTTCACTATAAATTATCTGAAGACCACCTAAATATCACTTGC 774134 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | |||||| | || |||||||| | ||| Sbjct 774133 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTCTGGGTCAGAGACTGAG 774074 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| |||| || || | ||||| || || ||||| ||||| | ||||| Sbjct 774073 AACAGTACTGAGATTCTCTCACACCCCAATGGGACAACGTCTGTCACCAGCATCCTCCAG 774014 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | |||||||||||||||||| |||| |||||||| |||||||| || ||||||||| Sbjct 774013 ATCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGATCTGCCAGGTACTGCACCTGGGG 773954 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| ||| ||| ||||||||||| | ||| |||| Sbjct 773953 ACTGTGACTGACTACAGGGAAACTGTGAACAAAGGTA 773917 >seq17408 Length=748846 Score = 183 bits (202), Expect = 4e-41 Identities = 140/166 (84%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 535762 CTTCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 535821 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| || |||||||||||||||||||| || ||||| |||| Sbjct 535822 GGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 535881 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 |||||||||||||||| ||| ||||||||| || || |||||| Sbjct 535882 CACCACGTAAAACTGGCAAAGGGCGTGGCACGGAGGTAGGGCCATG 535927 >seq26173 Length=4939203 Score = 172 bits (190), Expect = 6e-38 Identities = 261/369 (71%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 146772 CTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAATC 146831 |||||| |||| |||| || | ||| || || |||||| || | ||| || Sbjct 2187697 CTAAACAGCCATTTCCATTTTAATAGTGGGATGGGGACTGTAGCCTTCAATCTGAAAGTC 2187638 Query 146832 TTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGG 146891 ||| ||| ||| || || || | ||| || || | || |||||||| ||||| || Sbjct 2187637 TTCAGCCTTGAGGTCATCGATTTTCTCAACTTTCCCAAGGATTTTGAGCTTTGGGAAAGG 2187578 Query 146892 TCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGC 146951 | | || | ||||| |||||||| |||| ||| | ||||| | ||| || Sbjct 2187577 CCTTGATTTTCCCTAAAGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGTAAATGTGTGC 2187518 Query 146952 GTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTA 147011 || |||| ||||| ||| |||| || ||||| ||||| || | ||| || | |||||| Sbjct 2187517 ATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTA 2187458 Query 147012 GGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCT 147071 ||||||||| | |||||||| |||||||||| || ||||||||| |||| || ||| | Sbjct 2187457 GGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACTT 2187398 Query 147072 CTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCA 147131 ||||||||||| ||| || || || || ||||||| || ||||| ||| ||||| Sbjct 2187397 CTGGTACAGCT-GCAGGACAG-TCATGGTTCACCACGTAGAAGTGGCAAAGGGCATGGCA 2187340 Query 147132 CGGCGGCAG 147140 | | ||||| Sbjct 2187339 CAGGGGCAG 2187331 >seq29423 Length=3049034 Score = 141 bits (156), Expect = 1e-28 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 2663940 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2663881 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||| | || ||||| |||| || ||||| || |||| Sbjct 2663880 TGCCGCAGGCTGAGGACCA------------TGGCCCCAACATCAAAGAGCACGTGAACT 2663833 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| || || ||||| |||| ||| Sbjct 2663832 CCCTGGGGGAGAAGCTGAAGACCCTCAGGCTGCGGCTGAGGCGCTGT 2663786 Score = 113 bits (124), Expect = 5e-20 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| |||||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 2661590 AGCTCCAAGACAAGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 2661531 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| |||||||||||||| |||| Sbjct 2661530 TAGAAGCCTACATGACAACAAAGATGA 2661504 >seq29056 Length=1419073 Score = 122 bits (134), Expect = 1e-22 Identities = 539/840 (64%), Gaps = 54/840 (6%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| || | ||||||| ||||| | | |||||| Sbjct 328659 GTATTCCCTGGTGTTCACGGTTGGTCTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 328718 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| ||||| | |||| |||| ||||||||||||| |||| |||| ||||| || || Sbjct 328719 AAAATACAACAAGCTCCGGATTATGACCAACATCTACCTGCTCAATTTGGCCATTTCCGA 328778 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || || |||||||||| | ||| |||| || Sbjct 328779 CTTGCTCTTCTTATTCACTCTGCCATTCTGGATTCACT--ATGTTGGGTGGAA----TGA 328832 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | || ||| ||||||||||| | || || | || ||| |||| Sbjct 328833 GTGGGTTTTTGGCCCCCATATGTGTAAGTTGCTCTCTGGGCTCTATTACATGGGCTTGTA 328892 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || ||| | || |||| | ||| ||||||| || | || |||| Sbjct 328893 CAGCGAGATCTTCTTCATCGTACTCCTGACCATAGACCGGTATCTGGCCATCGTTCACGC 328952 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCA--ATAGGCATCCTCGCCAGCCTCCTGGCC 8967 ||| | | | | ||| | |||| | || ||| || ||||| || | || Sbjct 328953 TGTGTTTGCCCTTCGAGCCCGGACG--ACCACTTTCGGTATCATCACCAGCATCTTCACC 329010 Query 8968 TGGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCC 9027 ||| ||||| | ||| | | || | || || |||||||| |||| ||| | | | Sbjct 329011 TGGGGCCTGGCAGGGTTAGCAGCCCTCCCTGAATTTATCTTCCATGAGTCCCAAGAGGAG 329070 Query 9028 ACAGGCAAGGGGGTCTGCCAAGCCTCCT---ACACAGACT----------TTTGGAAGGG 9074 | || |||| || |||| | || ||| | |||||| | Sbjct 329071 TTTGAACAGACTTTCTG-CAGTCCTCTTTACCCAAAGAATGGAGAAAATGCCTGGAAGTG 329129 Query 9075 GGTTGATGTTACCAGCATGACCAT----GGTCACCCTCATCCTGCCTTTGCTTATCATGG 9130 | ||| | || |||| || |||| | || |||||| |||| | |||| Sbjct 329130 TTTCCATGCTCTGAGGATGAATATCTTGGGTCTCGCT----CTGCCTCTGCTCGTTATGG 329185 Query 9131 CCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAAC 9189 || ||||||||| |||||| || || || | | |||| || || | ||| Sbjct 329186 CCATCTGCTACTCAGGAATCATTAAAACACTGCTGAGATGCCC-CA----GTAAAAAAAA 329240 Query 9190 CTGC-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCC 9248 | | | ||| || ||||||||| |||| ||||| | | ||||| || |||| || Sbjct 329241 ATACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTCTTTGTTTTCTGGACACC 329300 Query 9249 CTACAA---CGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTG 9305 |||||| || | ||| | | | || | ||| | || | | | | || || Sbjct 329301 CTACAATCTGGTTGTCCTCCTCTCA---ACTTTTCAA-ATGC--ACCTGGAGACTGAGTG 329354 Query 9306 TGAAGCGCGGCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCAC 9362 ||| || | |||| | ||||| ||||| | ||||| | ||| ||||||| | ||| Sbjct 329355 TGA---GCAGAGCAGACAGCTGGACCTGGCCATGCTGGTGACGGAGGTGATCGCGTACAC 329411 Query 9363 CCACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 ||||||||| ||||||||||| |||||||| || || || || | |||||| || |||| Sbjct 329412 CCACTGCTGTGTCAACCCCGTGATCTACGCCTTCGTTGGTGAGAGGTTCCAGAAGCACCT 329471 Score = 114 bits (126), Expect = 2e-20 Identities = 207/297 (70%), Gaps = 12/297 (4%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| || || ||||| ||| ||| |||| |||||||| Sbjct 253290 GTACTCAGTGGTATTTGTCATTGGCCTGATAGGCAACATCCTAGTGGTCCTGGTCCTCAT 253231 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||| | ||||| ||| |||||||||| | ||| Sbjct 253230 GCAATACAAGAGGCTCAAAAGCATGACGAGCATCTACCTCCTCAACCTGGCTGTGTCTGA 253171 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| || | | ||||| || ||||| |||||| ||| | | | ||| | || Sbjct 253170 CCTGATGTTCCTCTTCACGCTGCCCTTCTGGATTGACTACAA-----GCTGAA-GGATGA 253117 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTAT-AGTGGGC-CT-TTGCAACGTGGCACT 8846 |||| | | |||||||||||||| | ||||| || || || ||| | Sbjct 253116 CTGGGTTTTTGGTGATCACATGTGTAAGTTGCTCTCTGGGCTCTATTTCA---TGGGCTT 253060 Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 ||||||||| || | || ||||||||| |||| | |||||||| || || |||| Sbjct 253059 GTACAGCGAGATCTTCTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATTGT 253003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583263991663200