Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq30076 91.5 2e-13 seq11692 84.2 2e-11 >seq30076 Length=4501 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/148 (75%), Gaps = 10/148 (7%) Strand=Plus/Plus Query 13230 TCCTCTATAGCTCAGTTGGTAGAGCAGGTGACTGTTAATCACCCTGTCCCTGGTTCGAGT 13289 ||| | |||||||||| ||||||||| ||||||||||||| ||||||||||||||| Sbjct 3584 TCCGCGATAGCTCAGTCGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCGAGT 3643 Query 13290 CCAGGTGGAGGAG------TCGGGCGAATAACTCAG--CGGTAGAGTGCCTCCTTTACAC 13341 |||||| | |||| ||||| | || | ||| |||||| | |||| |||| Sbjct 3644 CCAGGTCGCGGAGCCAATCTCGGG-GTGTAGCGCAGTCCGGTAGCGCGCCTGCTTTGGGA 3702 Query 13342 GGAGATTGTCGGGGGTTCG-ATCCCCTC 13368 | || |||| || ||||| |||||||| Sbjct 3703 GCAGGATGTCAGGAGTTCGAATCCCCTC 3730 >seq11692 Length=22366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 13227 CAATCCTCTATAGCTCAGTTGGTAGAGCAGGTGACTGTTAATCACCCTGTCCCTGGTTCG 13286 || ||| | |||||||||| ||||||||| ||||||||||||| |||||||||||| Sbjct 13756 CATTCCGCGATAGCTCAGTCGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCG 13815 Query 13287 AGTCCAGGTGGAGGAG 13302 ||||||||| | |||| Sbjct 13816 AGTCCAGGTCGCGGAG 13831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552261498479040