Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq23530 178 2e-39
seq15277 125 1e-23
seq20687 123 3e-23
seq20974 107 3e-18
seq12120 104 3e-17
>seq23530
Length=2024980
Score = 178 bits (196), Expect = 2e-39
Identities = 276/393 (70%), Gaps = 1/393 (0%)
Strand=Plus/Plus
Query 39806 GCCCAATCAGC-TTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATG 39864
|||||||| || ||||||||||||||||||| |||| || | || || ||||| | |
Sbjct 954646 GCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTCTCAACGGCGTTGAAGAGGAATTC 954705
Query 39865 TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGAT 39924
|||| | |||||||| || || || | | ||||| |||||||| ||||| ||
Sbjct 954706 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTAT 954765
Query 39925 GTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGA 39984
|||||| || || || || || || || || | | ||||| ||||| || || |||
Sbjct 954766 GTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTG 954825
Query 39985 ACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAA 40044
| || | ||| |||| |||||||| ||||| |||||||| || ||| | || ||||
Sbjct 954826 GCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAG 954885
Query 40045 TACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTT 40104
||| || | | |||||| | || || || ||| | ||||| | || || ||
Sbjct 954886 AACACGTGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 954945
Query 40105 TGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCA 40164
|| | || || || ||||||||||| || || ||||| || || | |||| | |||
Sbjct 954946 GGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCCA 955005
Query 40165 TATATCACGATATTGTATTGGAAAAATAACAAA 40197
| |||||| |||| || ||||| || |||||
Sbjct 955006 AACATCACGGTATTCCATAGGAAAGATGACAAA 955038
>seq15277
Length=4737824
Score = 125 bits (138), Expect = 1e-23
Identities = 102/124 (82%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||| ||||| ||||| | ||| || ||||||||||| || ||||| || || || ||||
Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| |||||||||||||| ||||| ||||| ||||| |
Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539
Query 39759 CAAC 39762
| ||
Sbjct 3367540 CTAC 3367543
>seq20687
Length=1308170
Score = 123 bits (136), Expect = 3e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 999335 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 999276
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 999275 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 999216
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 999215 TTTCTTACACCAT 999203
Score = 120 bits (132), Expect = 4e-22
Identities = 129/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| |||||||| |||||||| || |||||| ||| | || || || ||||| || |
Sbjct 1001579 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 1001520
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
||| || || |||||||| |||||||||||||| || || ||||| || | || | |
Sbjct 1001519 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCGGCTGCCATCTTGAGTATGGTTT 1001460
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| |||| |||||||| | ||||||| ||| || || | ||||| ||||
Sbjct 1001459 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 1001409
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| |||| ||| |||||||| ||||| || || || | ||| || || ||||| |
Sbjct 976521 CACCACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCA 976462
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
| || ||||||||||| || | ||||| | || || ||| |||| ||||| || ||||
Sbjct 976461 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 976402
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| ||| | ||| || || || | |||| || || || ||||||||||
Sbjct 976401 CTAGTTCCACAGTAGTGACCCCACTGTATAAGCCCTGGATTACTTTCATGG 976351
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||||||||| || ||||| ||||||||||| || | ||||| || |||| | |
Sbjct 989759 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACGCTGC 989700
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| |||||||| || || || | ||| || ||||| | || || ||||||| ||
Sbjct 989699 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 989640
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 989639 TCCAGGTAAATGGC 989626
>seq20974
Length=1049469
Score = 107 bits (118), Expect = 3e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| || ||||||||||| || || | || ||
Sbjct 250905 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 250964
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| ||
Sbjct 250965 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 251024
Query 39761 AC 39762
||
Sbjct 251025 AC 251026
Score = 89.7 bits (98), Expect = 7e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
|||||||| || |||||||||||||| ||||||||||| || |||||||| || || |
Sbjct 255286 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 255342
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106
|| |||||||| || || || | | | | || ||||||| | || ||||||||
Sbjct 255343 TGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTG 255402
Query 40107 ATATATCTAC 40116
||| ||| ||
Sbjct 255403 ATAAATCAAC 255412
Score = 86.0 bits (94), Expect = 9e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 39428 AATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCA 39487
||||| | |||||||| |||||| || || |||||||| || || |||||||| ||
Sbjct 238157 AATCCAAGTTCTGAAAGCAATCTGTCAGCTACAAATTCAATATACTGTTTCATCAAAACA 238216
Query 39488 CAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTC 39534
||||||||||| ||||| |||||| | || || |||| ||||||
Sbjct 238217 CAATTCATTCCGATGAGGCCAACTGGCAAGGCTTCTGTTAAAAACTC 238263
>seq12120
Length=1614126
Score = 104 bits (114), Expect = 3e-17
Identities = 209/307 (68%), Gaps = 5/307 (2%)
Strand=Plus/Minus
Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406
||| || || ||||| ||| | || || || || |||||| | ||| ||||| |
Sbjct 1445337 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 1445278
Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466
| || || ||| |||| |||| | | || ||||| || ||| ||| ||| | || |
Sbjct 1445277 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAGTTCGATCACCCTTTTTGAC 1445218
Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526
|| | || ||| ||| ||| | ||| | || |||| ||| || |||||||||||
Sbjct 1445217 TTCGAGCTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 1445158
Query 37527 ATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGC 37583
||| || || || |||||||||| || |||| || ||| || || | |||||
Sbjct 1445157 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 1445098
Query 37584 TATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCT 37643
|| ||| ||||| || || || | || ||| |||| |||||||| | ||| | ||
Sbjct 1445097 TACTCTCCCATAGCACCCATTAGGAAGAGCTATCTGAATGTCTGTTTTCA-CAAGAG-CT 1445040
Query 37644 TTCTCCA 37650
|||||||
Sbjct 1445039 TTCTCCA 1445033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686645087125320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |