Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq9203 484 2e-132 >seq9203 Length=13179 Score = 484 bits (536), Expect = 2e-132 Identities = 707/989 (71%), Gaps = 8/989 (1%) Strand=Plus/Minus Query 19772 ATATACTTAGGTCTTGATTTTGTTTCTAAGTAAATTCTACCTATATATTCACCGAGAACA 19831 |||||| |||||| |||| || ||| || | || ||||||||||| || ||| Sbjct 11516 ATATACCGCGGTCTTTGTTTTACCTCAGTGTATATGCGCCCGATATATTCACCCAGCACA 11457 Query 19832 CCAATCCCGATCAGTTGCACTCCACCCAAGAAA-AGTATTGATACAAGCAGGGAGGGATA 19890 ||||| || |||| ||| | ||||| |||||| || || || || || || || ||||| Sbjct 11456 CCAATACCTATCAATTGAATGCCACC-AAGAAACAGAATGGAGACGAGTAGCGATGGATA 11398 Query 19891 CCCGCGTACTGGGTTACCAAAGACAAGGGTGTCTATAATCATCCATGCACCATATAAAAA 19950 || | || | ||||| ||| || | || || | ||| | |||||| ||||| Sbjct 11397 ACCAGGCACAGCATTACCCCAGATAACTTTATCAATTACCATGAAGCTACCATACAAAAA 11338 Query 19951 TGAAATGCTTGCAACAAACAAGCCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAA 20010 ||| | | || |||||||| |||| ||| |||||||| | ||||| | | |||||| Sbjct 11337 TGAGCAGGTAGCCACAAACAACCCTAAATATGTCCATACTCTTAGAGGTACAGATGAAAA 11278 Query 20011 ACTTGTGATACCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTAAATTTTGAGATGCC 20070 || || || ||||| | ||||||||||||||||||||||||||||| ||||| || Sbjct 11277 GCTGGTTATTCCTTCAATCGCCAGATTCCATAATTTCCAGCCATTAAACTTTGAATCCCC 11218 Query 20071 AGCAACACGCTCTGCGCGTACA-TATTCAACGACATCCGTCTGACCACCCACCCAGCTCA 20129 |||| | ||||| | || | |||||||| | || | | || | |||| || Sbjct 11217 AGCAGACCTTTCTGCTC-TAGAGTATTCAACCAGTTCAATATTTCCGCTTGCCCATGACA 11159 Query 20130 GTATGCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCAC 20189 ||| |||||||| || | |||||||||||||| ||| |||| || || || |||| | Sbjct 11158 ATATCCCTTTCATAAACAAATTGCGCTCAGGCAGCAGCTTAACATTTTCGACTGCCTCTC 11099 Query 20190 GAGACATGAGTCGAAAATCTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGT 20249 ||||| ||||| ||||| || ||||| || || || | || || || ||||| |||| Sbjct 11098 TTGACATTAGTCGGAAATCACCTACATTCTCTTCAATTCTCGGCGTACTGATTTTATTGT 11039 Query 20250 GTAATTTATAGAACCACTCAGCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTG 20309 | || |||| |||||||| ||||| || | ||||| | || | ||||| || | Sbjct 11038 GGCATCTATAAAACCACTCGGCTGTTTTCCTTTTCAACCAGTTTTCTTTAGAGCGATCAG 10979 Query 20310 AACGTTTAGCAAGCACCATGTCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATAA 20369 ||| || || | ||| | ||||| ||| |||||| ||| |||||| | || || | Sbjct 10978 TACGCTTGGCTAACACTACATCAGCCCCTAACTGCCATTTTCTAATAAGCTCTGGAATTA 10919 Query 20370 CCTCAATTGGGTCTTGCAGGTCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGT 20429 | ||||| || || || || || |||||||| |||||||||||||| || | |||| | Sbjct 10918 CTTCAATGGGATCCTGAAGATCTACATCAATTGGAATTACAGCATCTCCAGTCGCATATT 10859 Query 20430 CTAACCCTGCAAATAAGGCTGGTTCTTTACCAAAGTTGCGTGTAAATGACAGCGGAACAA 20489 ||| || ||||||| ||||| |||||||| || || || || || |||| | | Sbjct 10858 CTATACCAGCAAATAGCGCTGGCTCTTTACCGAAATTTCGGGTGAAGCTTAGCGCCATCA 10799 Query 20490 CTAGCGGGTCTGAAACAGCCAGCGCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGT 20549 |||| |||| | || |||||||| ||||||| ||||| | ||| |||| Sbjct 10798 CTAGACAATCTGCAGTCGCATATTTATTAATAATCAACTCTGTTGCATCGTGACTACCGT 10739 Query 20550 CATTTATGAATACAATTTCTACTTCATA-TGGCTTCAACTCTTGGAATTCACGTACCGTT 20608 |||||||||| | |||||||||||||| | || ||||||||| | |||||| || | | Sbjct 10738 CATTTATGAAGATTATTTCTACTTCATACTCGC-TCAACTCTTTGTTTTCACGAACGGCT 10680 Query 20609 TTATAGAAAACAGGTATCGCTTCTTCTTCATTGAAGACAGGAACGACAAGAGATATTTTC 20668 |||||||| | |||||| || |||||||||||||| ||||| || || | ||||||||| Sbjct 10679 TTATAGAAGATAGGTATTGCATCTTCTTCATTGAAAACAGGTACAACCAATGATATTTTC 10620 Query 20669 ATTTCGCATCCCTAAAGACAATGAACTTTGAATAGACGAAACCGCAC-ACCAGACTGATG 20727 |||| ||| |||| ||||| | ||||| || | ||| || ||| | || || || Sbjct 10619 ATTTTTTATCTTTAAAAACAATCAGTTTTGAGTAAAAGAATCC-CACAATCAAGCTAATT 10561 Query 20728 GCGGAGAAGGTGATAAGAGTGACTATTGG 20756 || || || || || || || | ||||| Sbjct 10560 GCAGAAAATGTTATCAGCGTTAAAATTGG 10532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122678440778006