Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq23530 143 2e-29 seq29481 116 3e-21 seq15277 102 6e-17 seq26173 100 2e-16 seq17408 91.5 1e-13 seq20974 82.4 6e-11 >seq23530 Length=2024980 Score = 143 bits (158), Expect = 2e-29 Identities = 229/324 (71%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || |||| | ||| | ||||| |||| | ||||| |||| Sbjct 955038 TTTGTCATCTTTCCTATGGAATACCGTGATGTTTGGCAGGTGTATAGGAAAGCGGAGGCT 954979 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || || |||||||| || || || || | | || ||| | ||||| ||| || Sbjct 954978 TCCTTCTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCAC--TGGGAAGCCC 954921 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || | || | | |||| | || ||| |||| || | ||| || || || | Sbjct 954920 TGAAGCCTGAGGAGAGATATTTCACTTCACGTGTTCTGGCTTTCTCTGCAGCAAGTGATG 954861 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | ||||| |||||||| ||||| ||| || ||||||||||| ||||| ||||| Sbjct 954860 GCATAGTAAATGAAAACTTGGTGGAGCGGCTTAGCCAAGAAGTTCAGATTACG-GAAGCC 954802 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || | || ||||| || ||||||||||| ||||| || ||||| |||||||||||||| Sbjct 954801 CGTTACTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTACAGTCTC 954742 Query 43997 CTGATAGATACGTACATCAAAGAT 44020 || | || || ||||| |||||| Sbjct 954741 CTCACTGACACTTACATTAAAGAT 954718 >seq29481 Length=5302383 Score = 116 bits (128), Expect = 3e-21 Identities = 174/246 (71%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 47201 CATTGGTTTTACAAC-GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||||| | ||| | || ||||||||| | ||| | ||| | || ||| | | Sbjct 614859 CAGTGGTTTTAGGAGTGTGCTACAGTTTTTAGGATTATATAAGAAAACTGGTAAATTGGT 614918 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || || || |||| |||||||| ||| || |||||||| ||| | | | Sbjct 614919 ATTTCTTGGATTGGATAATGTGGGAAAAACAACATCGCTACACATGCTAAAAGATGACGG 614978 Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379 | | | ||| | | | || ||||| || || ||| ||||||| ||||||||||| Sbjct 614979 ATTTGGACAACATGTCTCAATGTTTCATCCCACTTCAGAAGAACTAACCATTGCTGGCAT 615038 Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439 || |||| || |||||| | || ||||| ||||||| || ||| |||| |||| || Sbjct 615039 GACCTTTACAACTTTTGATCTGGGTGGACATGTTCAAGCTCGAAGAGCGTGGAAAAACTA 615098 Query 47440 TTTTCA 47445 |||| Sbjct 615099 CCTTCA 615104 >seq15277 Length=4737824 Score = 102 bits (112), Expect = 6e-17 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct 3369492 CGGTTTAGCCAAGAAGTTCAGATTACG-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 3369434 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| || || || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 3369433 CATGGAGAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 3369376 >seq26173 Length=4939203 Score = 100 bits (110), Expect = 2e-16 Identities = 125/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 |||||| || || |||| || | ||||| |||| ||| || || || | || ||||| Sbjct 2187377 ACTGTCCTG-CAGCTGTACCAGAAGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCAACAT 2187435 Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGA 41221 || || ||||| |||||||| || |||||||||||| | || | || || ||||| Sbjct 2187436 CGCCAGCTATGCCCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGTGA 2187495 Query 41222 ATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGC 41271 | ||| ||||| || ||||||| ||| |||||| | |||||| |||| Sbjct 2187496 CTCTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACACTGAGC 2187545 >seq17408 Length=748846 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || ||||||||||| || ||||| ||||| || || |||| || || ||||| ||| Sbjct 535899 TGCCAGTTTTACGTGGTGAACGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGAC 535840 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 ||||| || || || || || ||||| || || || || |||||||| || ||||| ||| Sbjct 535839 ATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCA 535780 Query 41196 CAC 41198 ||| Sbjct 535779 CAC 535777 >seq20974 Length=1049469 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| | |||||||| Sbjct 258245 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 258186 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 258185 TCCTTCTGGACAGCAGAAGAGGT 258163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397307226381565