Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq6883 143 3e-29 seq3805 134 1e-26 >seq6883 Length=1082 Score = 143 bits (158), Expect = 3e-29 Identities = 178/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 58102 CGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGT 58161 |||||| || ||||| |||||||||||||||| || ||| | || || || ||||| Sbjct 247 CGGCTGCAAGGCGGGTTTGGTATTCAACCCGGCTACTCCGTTGAGCGTGCTTGAGTACGT 188 Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTC 58221 |||||||| | || || || |||||||| ||| ||||||||||||||||| ||| Sbjct 187 GATGGACAAGGTCGACATGGTCTTGCTGATGAGCGTCAACCCAGGCTTCGGCGGGCAGAA 128 Query 58222 TTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGT-CGCCGCATTGATGCGTCCG 58280 || || || || || | || ||||| || | ||| ||| | || |||||||| | Sbjct 127 GTTCATCCCTGGTACTTTGAACAAGCTGCGTGAGGCCCGTGCGCTG-ATCGATGCGTCGG 69 Query 58281 GTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGATCG 58340 | |||||||||||||| | |||||||| || || || |||||||| | ||||||| Sbjct 68 GGCGTGACATTCGCCTGGAGATCGACGGCGGGGTCAACGTCAACAATATTCGTGAGATCG 9 Query 58341 C 58341 | Sbjct 8 C 8 >seq3805 Length=8350 Score = 134 bits (148), Expect = 1e-26 Identities = 186/258 (72%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 58085 CAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTC 58144 || ||||| || || |||||| || || || ||||| ||||||||||| || || Sbjct 7981 CAACTGATCAAGGACGGCGGCTGCAAGGCCGGCCTGGTGTTCAACCCGGCCACCAGTCTG 8040 Query 58145 AGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCA 58204 || | ||||| |||||||| | || || | ||||||||| ||| |||||| Sbjct 8041 GACGTCCTGAAATACGTGATGGACAAGGTCGACATGGTGCTGCTGATGAGCGTCAACCCA 8100 Query 58205 GGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGC 58264 |||||||| || ||| || |||||| ||||| || || || || |||| ||| ||| Sbjct 8101 GGCTTCGGTGGTCAGAAGTTCATTCCGGGCACGCTCGACAAGCTACGTGAAGCGCG-CGC 8159 Query 58265 -CGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAA 58323 | || || || ||| ||||||||| |||||| | ||||| ||||| || ||||| Sbjct 8160 GCTGATCGACGCCAGCGGCCGCGACATTCGTCTGGAAATCGACGGTGGCGTCAACGTGAA 8219 Query 58324 CAATATCGGCGAGATCGC 58341 ||| ||| |||||||||| Sbjct 8220 CAACATCCGCGAGATCGC 8237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471060684459240