Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_027993.1 Length=43587 Score E Sequences producing significant alignments: (Bits) Value seq698 805 0.0 >seq698 Length=3433 Score = 805 bits (892), Expect = 0.0 Identities = 814/1052 (77%), Gaps = 24/1052 (2%) Strand=Plus/Minus Query 5945 ATGGCAATTACCACTATCGGCGATATCGTAACTGGCAACATCCCGGTCCTGGCGTCTTAT 6004 ||| | || ||||| ||||| ||||| | || || ||||||||||| ||| | || || Sbjct 1230 ATGCCTATCACCACGATCGGTAATATCATCACCGGTAACATCCCGGTGCTGACCTCGTAC 1171 Query 6005 ATGACCGAGGACCCGGTAGAAAAAACCGCGTTCTTCCAGTCTGGTATTCTGACCCCGACT 6064 ||||| | |||||||| ||||| |||||||||||| |||| || ||||| ||||| || Sbjct 1170 CTGACCCAAGACCCGGTTGAAAAGACCGCGTTCTTCGAGTCCGGCATTCTCACCCCAACC 1111 Query 6065 CCGTACGCTGCCGAGATTGCTCGCGGTCCGTCCAACGTCGCCAACATTCCTTTCTGGAAA 6124 ||||||||||| ||||| || ||||| ||||| ||| |||| ||||| || | |||||| Sbjct 1110 CCGTACGCTGCTGAGATCGCACGCGGCCCGTCGAACATCGCGAACATCCCGTACTGGAAG 1051 Query 6125 GCGATTGATACTTCTATCGAGCCTAACTACTCGAACGATGTTTATCAGGACATCGCTACC 6184 |||| || | || ||||||| ||||||||||||||||| || ||| | || Sbjct 1050 TCGATCGACGCATCCGTCGAGCCGAACTACTCGAACGATGTGTACGCCGACGTGGCAGAG 991 Query 6185 CCGCGTAATGTGCAGACTGGCGAGATGATGGCCCGCGTTGCGTACCTGAACGAAGGTTTC 6244 ||||| || | | || ||||| ||| ||||||| ||||||||||| ||||||||||| Sbjct 990 CCGCGCAACATTGAAACCGGCGATATGCTGGCCCGTGTTGCGTACCTCAACGAAGGTTTT 931 Query 6245 GGTCAGGCGGACCTGACTGTCGAACTGACCAGCCAGAACCCTCTGCAATCCGTAGCGTCC 6304 || ||||| |||||||||||||| ||||||||| ||||||| ||||||||||| || | Sbjct 930 GGCCAGGCCGACCTGACTGTCGAGCTGACCAGCAAGAACCCGCTGCAATCCGTTGCTGCT 871 Query 6305 CGTCTGGATAACTTCTGGCAGCGTCAGGCACAACGCCGTCTGATTGCTACCGCGCTCGGT 6364 || ||||| |||||||||||||| ||||| || ||||| ||| | || ||| | || ||| Sbjct 870 CGCCTGGACAACTTCTGGCAGCGCCAGGCTCAGCGCCGGCTGTTGGCCACCTCTCTGGGT 811 Query 6365 CTGTACAACGACAACGTAGCTGCTACCGATGCTTACCATACGCAGAACGATATGGTTATC 6424 | |||||||||||| | | || || ||||| | |||||| |||||||| ||||| ||| Sbjct 810 ATCTACAACGACAACATCGGCGCAACTGATGCGTTCCATACCCAGAACGACATGGTGATC 751 Query 6425 GACGTGTCCGCTACTCTGGGCTTCGACGCAGGTGCGTTCATCGACGCCACTCAGACTATG 6484 ||||| |||||| || || ||||| || || || ||||||||||| || ||||| ||| Sbjct 750 GACGTTTCCGCTGCTGGCGGTTTCGATGCGGGCGCCTTCATCGACGCGACCCAGACCATG 691 Query 6485 GGCGATGCTCTGATGGGTAACGGTGGTGAGGTGCTGGGCGCTATCGCGATGCACAGCTTC 6544 || ||||| ||||||| | || || ||||||| |||| || ||| |||| |||||| Sbjct 690 GGTGATGCGTTGATGGGGACTGGCGGCCAGGTGCTCGGCGTCATGGCGGTGCATAGCTTC 631 Query 6545 GTTTATGCACAGGCGCGTAAGCAGCAGCTTATCGACTTCATTCGCGACGCTGACAACAAC 6604 || |||| | ||||||| ||||| | ||||||||||| || ||||||||||||||| Sbjct 630 GTGTATGGCGACATGCGTAAGAAGCAGATGATCGACTTCATCCGTGACGCTGACAACAAC 571 Query 6605 ACCATGTTTGCTAGCTACCAGGGCTACCGT---GTGATTGTTGACGACAGCATGACCGTA 6661 ||| | | || | ||||||||||||||| ||||| | |||| ||| |||||||| Sbjct 570 ACCCAGATCGCGACCTACCAGGGCTACCGCCTGGTGATCGATGAC--CAG-ATGACCGTG 514 Query 6662 GTCGGCACCGGCCCGAGC---CGTAAGTTCATCTCCATCATCTTTGGCAACGGTGCCATC 6718 ||||||||||| ||| || ||||||||| | | |||||||| | ||||| ||| Sbjct 513 ATCGGCACCGGC---AGCTCGCGCAAGTTCATCAGCGTGATCTTTGGTCAGGGTGCTATC 457 Query 6719 GGTTATGGTGAAGGCAACC-----CGTCCAACCCGCTGGAATACGAACGTGAAGCGTCCC 6773 ||||| ||||||||| || | ||||||| | ||||| || ||| | | | Sbjct 456 GGTTACGGTGAAGGCTCCCCTGAGCATCCAACC-----GCCTACGAGCGCCAAGAGGCTC 402 Query 6774 GCGGCAATGGTGGCGGCGTTGAAACCCTGTGGACCCGTAAGACCTGGTTGCTGCACCCAC 6833 |||| || ||||||||||||||| ||||||| ||| ||||||||| |||||||||| | Sbjct 401 GCGGTAACGGTGGCGGCGTTGAAGTGCTGTGGAGCCGCAAGACCTGGCTGCTGCACCCGC 342 Query 6834 TGGGCTACAGCTTCACCAGCGCGGTAATCACCGGCAACGGCACCGAGACTGTCGCC-CGC 6892 | |||||||| ||| || ||||||||||||||||||||||| |||| ||| Sbjct 341 TCGGCTACAGTTTCCTGTCGGCCACCATCACCGGCAACGGCACCGAGAC-CACGCCGCGC 283 Query 6893 TCCGCTTCCTGGCAGGACCTGGCGAACGCCTCCAACTGGAACCGTGTGGTTGACCGTAAG 6952 || || ||||||||||| |||||| ||| ||||||||||||| ||| | || || ||| Sbjct 282 TCTGCCTCCTGGCAGGATCTGGCGCTGGCCACCAACTGGAACCGCGTGATGGAGCGCAAG 223 Query 6953 CATGTACCGATTGCCTTCCTGGTAACTGGTGT 6984 || | ||||| ||||||||||| |||||||| Sbjct 222 CACATCCCGATCGCCTTCCTGGTTACTGGTGT 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139305974223394